Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 6.2e-136 487.6 282 100.0
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 5.5e-92 341.7 224 80.8
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.6e-91 340.1 232 76.7
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.0e-90 337.4 234 77.8
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.6e-83 313.5 232 70.3
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 1.6e-83 313.5 232 70.7
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 1.6e-83 313.5 248 69.0
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.4e-82 310.5 236 70.3
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.3e-74 283.1 236 63.1
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 2.0e-73 280.0 226 63.7
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 2.4e-71 273.1 236 60.6
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 2.4e-71 273.1 248 59.7
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 3.2e-71 272.7 215 67.0
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 4.1e-71 272.3 227 62.1
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 1.2e-70 270.8 236 64.0
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 2.0e-70 270.0 234 60.3
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 4.6e-70 268.9 227 61.7
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 2.3e-69 266.5 245 58.4
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 3.9e-69 265.8 246 57.3
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 6.6e-69 265.0 225 60.0
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 6.6e-69 265.0 223 62.3
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 6.6e-69 265.0 229 61.6
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.1e-68 264.2 235 60.9
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 1.5e-68 263.8 223 62.3
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.9e-68 263.5 246 56.9
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.9e-68 263.5 223 62.3
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 3.3e-68 262.7 223 61.4
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.3e-68 262.7 246 57.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 4.3e-68 262.3 224 62.1
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.2e-67 260.8 226 61.9
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.6e-67 260.4 232 56.9
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 3.1e-66 256.1 215 58.1
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 3.1e-66 256.1 220 63.6
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 4.0e-66 255.8 219 61.2
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 8.9e-66 254.6 224 59.8
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 1.2e-65 254.2 224 60.7
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.0e-65 253.4 231 58.4
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 3.4e-65 252.7 226 58.8
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 7.5e-65 251.5 239 54.8
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 9.8e-65 251.1 222 63.1
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 9.8e-65 251.1 229 57.2
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 1.3e-64 250.8 238 55.9
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 2.2e-64 250.0 238 54.2
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 2.9e-64 249.6 226 58.4
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 3.7e-64 249.2 230 57.0
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 4.9e-64 248.8 225 57.8
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 4.9e-64 248.8 231 55.8
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 6.4e-64 248.4 255 54.1
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.1e-63 247.7 236 56.4
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.9e-63 246.9 225 58.2
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.4e-63 246.5 226 57.5
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 2.4e-63 246.5 215 59.1
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 9.2e-63 244.6 226 57.1
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 9.2e-63 244.6 240 52.5
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.2e-62 244.2 236 53.4
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.2e-62 244.2 212 59.4
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.2e-62 244.2 212 59.0
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.2e-62 244.2 227 57.7
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 2.0e-62 243.4 231 54.1
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 2.0e-62 243.4 240 52.5
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.5e-62 242.7 214 58.4
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 3.5e-62 242.7 214 57.5
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 4.6e-62 242.3 236 53.4
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 4.6e-62 242.3 236 53.4
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 7.8e-62 241.5 240 54.6
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.3e-61 240.7 244 51.6
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.7e-61 240.4 213 54.9
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 3.0e-61 239.6 222 54.1
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 8.6e-61 238.0 241 52.3
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.1e-60 237.7 274 51.5
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.5e-60 237.3 244 51.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 9.5e-60 234.6 247 49.4
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.2e-59 234.2 214 56.1
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 2.8e-59 233.0 235 51.9
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 4.0e-58 229.2 215 55.3
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 6.8e-58 228.4 213 56.3
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.5e-57 227.3 213 56.3
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 4.4e-57 225.7 215 54.9
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 5.8e-57 225.3 209 54.1
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 2.9e-56 223.0 213 54.0
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 1.1e-55 221.1 190 60.0
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 3.2e-55 219.5 225 50.2
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 7.1e-55 218.4 248 50.4
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 4.6e-54 215.7 213 54.5
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 3.9e-53 212.6 188 62.2
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 9.5e-52 208.0 177 60.5
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.2e-51 207.6 155 65.2
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.6e-51 207.2 189 54.5
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 3.6e-51 206.1 193 58.0
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 6.2e-51 205.3 178 58.4
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 5.2e-50 202.2 206 55.3
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 9.9e-49 198.0 213 48.8
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 3.7e-48 196.1 211 49.8
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.6e-46 190.7 220 45.9
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 5.1e-45 185.7 187 53.5
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 5.1e-45 185.7 188 55.3
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 3.1e-42 176.4 254 40.9
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.8e-40 169.5 167 52.7
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.7e-37 160.6 224 41.1
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.7e-37 160.6 184 47.8
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 6.6e-37 158.7 93 80.6
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 1.5e-36 157.5 93 80.6
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.9e-36 157.1 143 59.4
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.4e-34 151.0 226 35.4
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 4.0e-34 149.4 93 72.0
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.7e-32 144.1 254 40.9
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 3.8e-32 142.9 211 37.4
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 2.4e-31 140.2 229 37.6
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 6.0e-30 135.6 134 56.0
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 7.9e-30 135.2 282 36.9
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 3.9e-29 132.9 133 54.9
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.3e-28 129.4 237 36.7
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 9.6e-28 128.3 134 53.0
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.6e-27 126.3 84 69.0
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 6.2e-27 125.6 172 38.4
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 7.6e-25 118.6 95 60.0
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 3.2e-23 113.2 152 46.1
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.0e-21 108.2 237 32.1
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.9e-20 104.0 169 43.8
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 6.9e-18 95.5 123 48.0
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.9e-15 87.4 59 64.4
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 3.3e-12 76.6 107 44.9
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 1.7e-08 64.3 83 43.4
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 1.4e-07 61.2 50 52.0
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 2.5e-07 60.5 51 54.9


User provided reference genes

Program Settings