Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.5e-136 489.6 250 100.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 4.4e-117 424.9 248 89.1
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 6.8e-110 401.0 248 84.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.3e-105 386.0 249 81.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 3.1e-94 349.0 253 75.1
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.9e-91 339.7 263 72.6
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.4e-86 323.6 253 70.4
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.4e-85 318.9 253 70.0
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 4.2e-83 312.0 254 68.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 5.4e-83 311.6 255 69.0
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 6.0e-82 308.1 255 69.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 7.8e-82 307.8 271 66.4
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.6e-79 298.9 287 62.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 8.4e-76 287.7 191 74.9
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 3.2e-75 285.8 192 76.6
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 3.2e-75 285.8 192 76.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 7.1e-75 284.6 190 73.7
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.6e-74 283.5 217 68.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 2.1e-74 283.1 188 75.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.7e-74 282.7 188 75.5
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 6.0e-74 281.6 273 58.2
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 7.9e-74 281.2 201 72.6
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.3e-73 279.6 200 72.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 3.0e-73 279.3 188 74.5
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 8.7e-73 277.7 188 74.5
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.1e-72 277.3 188 73.9
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.5e-72 276.9 194 73.2
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.5e-72 276.9 201 70.1
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.5e-72 276.2 195 71.8
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.5e-72 276.2 195 71.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 2.5e-72 276.2 194 71.6
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.3e-72 275.4 189 72.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 7.4e-72 274.6 188 74.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 7.4e-72 274.6 194 73.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 7.4e-72 274.6 188 73.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 9.6e-72 274.2 195 71.8
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.3e-71 273.9 191 75.4
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.3e-71 273.9 194 71.1
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.6e-71 273.5 189 74.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.1e-71 273.1 188 69.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 2.8e-71 272.7 191 74.9
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 2.8e-71 272.7 191 74.9
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.8e-71 271.9 191 72.3
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 6.2e-71 271.6 201 70.6
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 6.2e-71 271.6 204 69.1
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.1e-71 271.2 207 68.6
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 8.1e-71 271.2 207 67.1
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.1e-70 270.8 191 74.3
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.1e-70 270.8 194 71.6
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.1e-70 270.8 192 71.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-70 270.4 194 70.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.8e-70 270.0 195 72.8
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.8e-70 270.0 208 66.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.8e-70 270.0 195 72.8
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 3.1e-70 269.2 194 70.1
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.0e-70 268.9 195 72.3
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.0e-70 268.9 199 70.4
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 4.0e-70 268.9 199 70.4
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 4.0e-70 268.9 199 70.4
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.3e-70 268.5 187 73.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.3e-70 268.5 201 66.7
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.3e-70 268.5 195 70.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.3e-70 268.5 201 69.7
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.5e-69 266.9 189 72.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.0e-69 266.5 187 73.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.0e-69 266.5 236 62.7
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.6e-69 266.2 191 70.7
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 3.4e-69 265.8 244 60.7
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 4.5e-69 265.4 187 73.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 5.8e-69 265.0 196 70.4
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 7.6e-69 264.6 194 69.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 7.6e-69 264.6 189 69.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.7e-68 263.5 188 71.3
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.7e-68 263.5 191 69.6
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.2e-68 263.1 194 68.0
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-68 262.7 188 67.0
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 4.9e-68 261.9 188 67.0
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.9e-68 261.9 188 67.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.9e-68 261.9 188 67.0
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.4e-67 259.6 204 65.2
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 5.5e-67 258.5 178 75.3
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 5.5e-67 258.5 188 69.7
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 7.1e-67 258.1 183 72.1
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.6e-66 256.9 189 70.4
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.1e-66 256.5 188 68.1
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.0e-66 255.0 189 69.8
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-65 253.8 201 66.2
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.3e-65 253.1 250 60.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 3.0e-65 252.7 187 72.7
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.0e-65 252.7 201 66.7
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 8.7e-65 251.1 206 66.0
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 1.1e-64 250.8 213 63.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.9e-64 250.0 202 66.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.5e-64 249.6 186 72.6
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-64 249.2 212 59.4
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 4.3e-64 248.8 187 67.4
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 9.6e-64 247.7 193 65.8
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.3e-63 247.3 189 67.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.8e-63 246.1 203 63.5
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.7e-63 245.7 244 57.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 8.1e-63 244.6 184 70.1
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 2.4e-62 243.0 185 70.3
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.1e-62 242.7 247 57.5
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 5.3e-62 241.9 226 59.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.5e-61 240.4 195 67.2
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.4e-61 239.2 189 65.6
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 5.8e-61 238.4 167 69.5
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 3.2e-59 232.6 172 72.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 5.5e-59 231.9 199 62.3
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 4.3e-56 222.2 161 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.6e-53 213.0 215 58.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.7e-52 210.3 240 52.9
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.4e-51 207.2 135 80.7
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 4.2e-51 205.7 147 74.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 4.2e-51 205.7 216 52.3
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.8e-49 200.3 133 72.2
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.0e-49 199.5 134 75.4
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.1e-46 191.0 147 70.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 5.3e-46 188.7 172 55.8
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 5.3e-46 188.7 140 69.3
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.0e-45 186.8 142 68.3
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.6e-42 176.0 158 58.9
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.1e-40 171.0 108 75.9
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 2.6e-37 159.8 116 68.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.4e-33 147.5 92 79.3
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.0e-29 133.7 132 49.2
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.6e-29 133.3 189 45.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.9e-27 127.1 104 62.5
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.2e-26 124.4 104 67.3
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 4.0e-25 119.4 164 39.0
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.6e-24 116.7 103 60.2
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.4e-24 115.9 183 44.8
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 4.4e-24 115.9 132 43.2
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.0e-22 108.6 86 65.1
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.0e-22 108.6 86 65.1
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.2e-19 99.8 88 62.5
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 1.8e-17 94.0 79 63.3
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 3.7e-15 86.3 111 50.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.0e-12 78.2 134 46.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.8e-10 70.1 41 78.0
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 2.6e-08 63.5 52 61.5
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 4.9e-07 59.3 56 62.5


User provided reference genes

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