Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8833 Trifolium pratense HOM05D000229 ORTHO05D030024 6.2e-24 113.2 55 100.0
TPR.G3677 Trifolium pratense HOM05D000229 ORTHO05D000182 1.4e-23 112.1 55 98.2
Medtr4g036845 Medicago truncatula HOM05D000229 ORTHO05D000182 1.2e-22 109.0 55 94.5
Glyma.09G229500 Glycine max HOM05D000229 ORTHO05D000182 2.2e-21 104.8 55 90.9
Psat7g159600 Pisum sativum HOM05D000229 ORTHO05D000182 2.2e-21 104.8 55 89.1
VMungo1127G2160 Vigna mungo HOM05D000229 ORTHO05D000182 4.9e-21 103.6 55 90.9
Glyma.12G006800 Glycine max HOM05D000229 ORTHO05D000182 1.4e-20 102.1 55 87.3
Ca_25530_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 9.3e-20 99.4 55 89.1
Lj3g0005558 Lotus japonicus HOM05D000229 ORTHO05D000182 1.2e-19 99.0 55 83.6
Phvul.011G007600 Phaseolus vulgaris HOM05D000229 ORTHO05D000182 4.6e-19 97.1 55 83.6
Lalb_Chr01g0022411 Lupinus albus HOM05D000229 ORTHO05D030024 8.7e-18 92.8 54 83.3
SGA_v2.0_scaffold2G01217 Striga asiatica HOM05D000229 ORTHO05D000182 1.1e-17 92.4 55 78.2
arahy.Tifrunner.gnm1.ann1.6W49KF Arachis hypogaea HOM05D000229 ORTHO05D000182 2.5e-17 91.3 55 80.0
Lj8A43T53 Lonicera japonica HOM05D000229 ORTHO05D000182 2.5e-17 91.3 55 76.4
CiPaw.03G092500 Carya illinoinensis HOM05D000229 ORTHO05D000182 5.7e-17 90.1 55 76.4
arahy.Tifrunner.gnm1.ann1.P7LS6G Arachis hypogaea HOM05D000229 ORTHO05D000182 7.4e-17 89.7 55 78.2
Gohir.A03G059266 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.1e-16 88.2 55 74.5
Migut.F00483 Erythranthe guttata HOM05D000229 ORTHO05D000182 3.7e-16 87.4 55 72.7
FAN03G1512 Fragaria x ananassa HOM05D000229 ORTHO05D000182 4.8e-16 87.0 55 72.7
FAN10G2574 Fragaria x ananassa HOM05D000229 ORTHO05D000182 4.8e-16 87.0 55 72.7
FAN10G2752 Fragaria x ananassa HOM05D000229 ORTHO05D000182 4.8e-16 87.0 55 72.7
RcHm_v2.0_Chr1g0374161 Rosa chinensis HOM05D000229 ORTHO05D000182 4.8e-16 87.0 55 74.5
Atru.chr1.759 Acer truncatum HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 72.7
Actinidia13580 Actinidia chinensis HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 72.7
CSS0045689 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 72.7
FvH4_7g27320 Fragaria vesca HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 70.9
FAN06G3514 Fragaria x ananassa HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 70.9
Rhsim03G0166200 Rhododendron simsii HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 72.7
Thecc.03G154000 Theobroma cacao HOM05D000229 ORTHO05D000182 6.2e-16 86.7 55 72.7
CSS0023192 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 8.2e-16 86.3 55 72.7
Cfa008154 Carpinus fangiana HOM05D000229 ORTHO05D000182 8.2e-16 86.3 55 72.7
Haze_13891 Corylus avellana HOM05D000229 ORTHO05D000182 8.2e-16 86.3 55 72.7
Duzib205G0617 Durio zibethinus HOM05D000229 ORTHO05D000182 8.2e-16 86.3 55 74.5
Gohir.D03G106800 Gossypium hirsutum HOM05D000229 ORTHO05D000182 8.2e-16 86.3 55 74.5
Actinidia24998 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.1e-15 85.9 55 70.9
Oeu022473.1 Olea europaea HOM05D000229 ORTHO05D000182 1.1e-15 85.9 55 72.7
CiPaw.04G059300 Carya illinoinensis HOM05D000229 ORTHO05D000182 1.4e-15 85.5 55 72.7
Dinv16842 Davidia involucrata HOM05D000229 ORTHO05D000182 1.4e-15 85.5 55 70.9
Nitab4.5_0002816g0070 Nicotiana tabacum HOM05D000229 ORTHO05D000182 1.4e-15 85.5 55 72.7
Nitab4.5_0003490g0090 Nicotiana tabacum HOM05D000229 ORTHO05D000182 1.4e-15 85.5 55 72.7
Solyc03g093270.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 1.8e-15 85.1 55 70.9
Sopen03g024060 Solanum pennellii HOM05D000229 ORTHO05D000182 1.8e-15 85.1 55 70.9
PGSC0003DMG400014822 Solanum tuberosum HOM05D000229 ORTHO05D000182 1.8e-15 85.1 55 70.9
MD07G1252700 Malus domestica HOM05D000229 ORTHO05D000182 2.4e-15 84.7 55 70.9
Dinv06567 Davidia involucrata HOM05D000229 ORTHO05D000182 3.1e-15 84.3 55 69.1
FAN03G1108 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-15 84.3 55 70.9
FAN06G2303 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-15 84.3 55 69.1
Manes.06G133900 Manihot esculenta HOM05D000229 ORTHO05D000182 3.1e-15 84.3 55 67.3
Manes.06G134000 Manihot esculenta HOM05D000229 ORTHO05D000182 3.1e-15 84.3 55 69.1
Gorai.003G113200 Gossypium raimondii HOM05D000229 ORTHO05D000182 4.0e-15 84.0 55 72.7
Prupe.2G276200 Prunus persica HOM05D000229 ORTHO05D000182 6.9e-15 83.2 55 69.1
QL09p005415 Quercus lobata HOM05D000229 ORTHO05D000182 6.9e-15 83.2 54 66.7
Dinv16845 Davidia involucrata HOM05D000229 ORTHO05D000182 9.0e-15 82.8 55 67.3
Aqoxy7G00774 Aquilegia oxysepala HOM05D000229 ORTHO05D000182 1.2e-14 82.4 55 70.9
vmacro06813 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 1.2e-14 82.4 55 69.1
Ciclev10005463m.g Citrus clementina HOM05D000229 ORTHO05D000182 1.5e-14 82.0 55 67.3
MELO3C017668.2 Cucumis melo HOM05D000229 ORTHO05D000182 1.5e-14 82.0 55 69.1
CsaV3_4G003990 Cucumis sativus L. HOM05D000229 ORTHO05D000182 2.0e-14 81.6 51 70.6
Nn6g33940 Nelumbo nucifera HOM05D000229 ORTHO05D000182 2.0e-14 81.6 55 67.3
FAN01G1358 Fragaria x ananassa HOM05D000229 ORTHO05D000182 2.6e-14 81.3 51 70.6
PGR042G1397 Punica granatum HOM05D000229 ORTHO05D000182 2.6e-14 81.3 55 69.1
Sed0003248 Sechium edule HOM05D000229 ORTHO05D000182 2.6e-14 81.3 55 67.3
CAN.G48.36 Capsicum annuum HOM05D000229 ORTHO05D000182 3.4e-14 80.9 55 67.3
DCAR_020184 Daucus carota HOM05D000229 ORTHO05D000182 3.4e-14 80.9 55 67.3
Cc02_g04360 Coffea canephora HOM05D000229 ORTHO05D000182 5.8e-14 80.1 55 65.5
Hma1.2p1_0432F.1_g151840 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 5.8e-14 80.1 55 67.3
Nn1g00978 Nelumbo nucifera HOM05D000229 ORTHO05D000182 5.8e-14 80.1 55 67.3
COL.COLO4_14106 Corchorus olitorius HOM05D000229 ORTHO05D000182 1.0e-13 79.3 55 67.3
Potri.001G125400 Populus trichocarpa HOM05D000229 ORTHO05D000182 1.3e-13 79.0 55 65.5
Dinv16846 Davidia involucrata HOM05D000229 ORTHO05D000182 1.7e-13 78.6 55 63.6
Cpa.g.sc111.50 Carica papaya HOM05D000229 ORTHO05D000182 2.9e-13 77.8 55 61.8
Solyc03g093280.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 3.8e-13 77.4 55 63.6
Sopen03g024070 Solanum pennellii HOM05D000229 ORTHO05D000182 3.8e-13 77.4 55 63.6
CANSAT56G2434 Cannabis sativa HOM05D000229 ORTHO05D000182 1.1e-12 75.9 55 61.8
Solyc03g093290.2 Solanum lycopersicum HOM05D000229 ORTHO05D000182 1.4e-12 75.5 55 61.8
BcaB07g29833 Brassica carinata HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 61.8
BcaC03g18147 Brassica carinata HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 61.8
BolC2t12274H Brassica oleracea HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 61.8
AUR62015489 Chenopodium quinoa HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 63.6
Peaxi162Scf00241g00024 Petunia axillaris HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 63.6
Sabra01G0096500 Salix brachista HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 61.8
THA.LOC104821417 Tarenaya hassleriana HOM05D000229 ORTHO05D000182 1.9e-12 75.1 55 60.0
A02p42290 Brassica napus HOM05D000229 ORTHO05D000182 2.5e-12 74.7 55 61.8
BraA02t09158Z Brassica rapa HOM05D000229 ORTHO05D000182 2.5e-12 74.7 55 61.8
Nitab4.5_0002816g0100 Nicotiana tabacum HOM05D000229 ORTHO05D000182 2.5e-12 74.7 55 63.6
Nitab4.5_0003490g0050 Nicotiana tabacum HOM05D000229 ORTHO05D000182 2.5e-12 74.7 55 63.6
SalBow6G5779 Salvia bowleyana HOM05D000229 ORTHO05D000182 2.5e-12 74.7 56 66.1
BcaC01g02467 Brassica carinata HOM05D000229 ORTHO05D000182 3.2e-12 74.3 55 60.0
A06p29120 Brassica napus HOM05D000229 ORTHO05D000182 3.2e-12 74.3 55 60.0
C03p64470 Brassica napus HOM05D000229 ORTHO05D000182 3.2e-12 74.3 55 60.0
BolC3t18702H Brassica oleracea HOM05D000229 ORTHO05D000182 3.2e-12 74.3 55 60.0
BraA06t25860Z Brassica rapa HOM05D000229 ORTHO05D000182 3.2e-12 74.3 55 60.0
Peaxi162Scf00167g00518 Petunia axillaris HOM05D000229 ORTHO05D000182 3.2e-12 74.3 52 63.5
CARHR276210 Cardamine hirsuta HOM05D000229 ORTHO05D000182 4.2e-12 73.9 55 61.8
PGSC0003DMG400039522 Solanum tuberosum HOM05D000229 ORTHO05D000182 5.5e-12 73.6 55 61.8
PGSC0003DMG400041306 Solanum tuberosum HOM05D000229 ORTHO05D000182 5.5e-12 73.6 55 61.8
Aa31LG11G1210 Aethionema arabicum HOM05D000229 ORTHO05D000182 7.1e-12 73.2 55 60.0
CAN.G48.35 Capsicum annuum HOM05D000229 ORTHO05D000182 9.3e-12 72.8 55 58.2
MELO3C002170.2 Cucumis melo HOM05D000229 ORTHO05D000182 1.2e-11 72.4 55 63.6
Sp2g25600 Schrenkiella parvula HOM05D000229 ORTHO05D000182 1.2e-11 72.4 55 58.2
AL8G39300 Arabidopsis lyrata HOM05D000229 ORTHO05D000182 1.6e-11 72.0 55 60.0
C02p62150 Brassica napus HOM05D000229 ORTHO05D000182 2.1e-11 71.6 55 60.0
C02p62160 Brassica napus HOM05D000229 ORTHO05D000182 2.1e-11 71.6 55 60.0
AUR62002210 Chenopodium quinoa HOM05D000229 ORTHO05D000182 2.1e-11 71.6 55 61.8
Thhalv10004621m.g Eutrema salsugineum HOM05D000229 ORTHO05D000182 2.1e-11 71.6 55 60.0
Sc19g0002060 Simmondsia chinensis HOM05D000229 ORTHO05D000182 2.1e-11 71.6 55 58.2
ClCG01G014810 Citrullus lanatus HOM05D000229 ORTHO05D000182 3.5e-11 70.9 55 63.6
CsaV3_1G007520 Cucumis sativus L. HOM05D000229 ORTHO05D000182 3.5e-11 70.9 55 60.0
BcaB02g09644 Brassica carinata HOM05D000229 ORTHO05D000182 4.6e-11 70.5 55 56.4
ATR0317G010 Amborella trichopoda HOM05D000229 ORTHO05D000182 6.1e-11 70.1 55 65.5
AT5G62420 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 7.9e-11 69.7 55 58.2
Carub.0008s2310 Capsella rubella HOM05D000229 ORTHO05D000182 1.0e-10 69.3 55 58.2
TWI14G0996 Tripterygium wilfordii HOM05D000229 ORTHO05D000182 1.8e-10 68.6 55 60.0
EL10Ac3g05851 Beta vulgaris HOM05D000229 ORTHO05D000182 2.3e-10 68.2 55 56.4
Medtr1g056790 Medicago truncatula HOM05D000229 ORTHO05D030024 5.7e-09 63.5 34 88.2
Sed0006605 Sechium edule HOM05D000229 ORTHO05D000182 3.7e-08 60.8 55 56.4
SEGI_02825 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 3.7e-08 60.8 55 58.2
SEGI_06432 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 6.3e-08 60.1 55 56.4
SEGI_00736 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 8.2e-08 59.7 55 52.7
Lj7A698G76 Lonicera japonica HOM05D000229 ORTHO05D000182 1.1e-07 59.3 55 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2796 Anthoceros agrestis HOM05D000229 ORTHO05D000182 5.3e-07 57.0 55 45.5
COL.COLO4_14727 Corchorus olitorius HOM05D000229 ORTHO05D000182 9.0e-07 56.2 55 45.5
SEGI_05977 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 9.0e-07 56.2 55 52.7
SEGI_07209 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 9.0e-07 56.2 55 50.9
SEGI_26082 Sequoiadendron giganteum HOM05D000229 ORTHO05D030024 9.0e-07 56.2 55 50.9
SEGI_29035 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 9.0e-07 56.2 55 49.1
ATR0559G342 Amborella trichopoda HOM05D000229 ORTHO05D000182 1.2e-06 55.8 55 43.6
Pp3c10_13280 Physcomitrium patens HOM05D000229 ORTHO05D000182 1.2e-06 55.8 56 42.9
Potri.016G102300 Populus trichocarpa HOM05D000229 ORTHO05D000182 1.2e-06 55.8 55 43.6
Sabra16G0102400 Salix brachista HOM05D000229 ORTHO05D000182 1.2e-06 55.8 55 43.6
AL4G34700 Arabidopsis lyrata HOM05D000229 ORTHO05D000182 1.5e-06 55.5 55 43.6
DCAR_028769 Daucus carota HOM05D000229 ORTHO05D000182 1.5e-06 55.5 55 40.0
Duzib093G0946 Durio zibethinus HOM05D000229 ORTHO05D000182 1.5e-06 55.5 55 43.6
Gohir.A04G091200 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.0e-06 55.1 55 41.8
Gohir.D04G124400 Gossypium hirsutum HOM05D000229 ORTHO05D000182 2.0e-06 55.1 55 41.8
Gorai.012G107600 Gossypium raimondii HOM05D000229 ORTHO05D000182 2.0e-06 55.1 55 41.8
Prupe.6G262200 Prunus persica HOM05D000229 ORTHO05D000182 2.0e-06 55.1 55 41.8
THA.LOC104805608 Tarenaya hassleriana HOM05D000229 ORTHO05D000182 2.0e-06 55.1 55 41.8
Cpa.g.sc1430.3 Carica papaya HOM05D000229 ORTHO05D000182 2.6e-06 54.7 55 43.6
Eucgr.B02712 Eucalyptus grandis HOM05D000229 ORTHO05D000182 2.6e-06 54.7 55 43.6
SMO356G0131 Selaginella moellendorffii HOM05D000229 ORTHO05D000182 2.6e-06 54.7 56 50.0
SEGI_23411 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.6e-06 54.7 55 47.3
TPR.G27328 Trifolium pratense HOM05D000229 ORTHO05D000182 2.6e-06 54.7 55 43.6
arahy.Tifrunner.gnm1.ann1.SS8V9Z Arachis hypogaea HOM05D000229 ORTHO05D000182 3.4e-06 54.3 55 43.6
ECA236G5109 Erigeron canadensis HOM05D000229 ORTHO05D000182 3.4e-06 54.3 55 41.8
Gohir.A09G153400 Gossypium hirsutum HOM05D000229 ORTHO05D000182 3.4e-06 54.3 55 41.8
Hma1.2p1_0265F.1_g106210 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 3.4e-06 54.3 54 46.3
Mapoly0111s0050 Marchantia polymorpha HOM05D000229 ORTHO05D000182 3.4e-06 54.3 53 45.3
Carub.0187s0002 Capsella rubella HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 43.6
Hma1.2p1_0289F.1_g114670 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 45.5
Nn2g11246 Nelumbo nucifera HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 41.8
Nn2g13499 Nelumbo nucifera HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 43.6
PGR031G0990 Punica granatum HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 41.8
Sp4g20140 Schrenkiella parvula HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 41.8
SEGI_07230 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 4.5e-06 53.9 55 50.9
MD00G1141200 Malus domestica HOM05D000229 ORTHO05D000182 5.9e-06 53.5 55 43.6
AT2G37770 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 43.6
Ca_05444_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 41.8
Gohir.D09G149100 Gossypium hirsutum HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 40.0
Gorai.006G170300 Gossypium raimondii HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 40.0
Lj1g0017180 Lotus japonicus HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 40.0
PGR031G2382 Punica granatum HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 43.6
QL07p028790 Quercus lobata HOM05D000229 ORTHO05D000182 7.7e-06 53.1 54 40.7
SMO361G0345 Selaginella moellendorffii HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 41.8
SMO361G0702 Selaginella moellendorffii HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 41.8
SEGI_04739 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 7.7e-06 53.1 51 47.1
VMungo1383G0027 Vigna mungo HOM05D000229 ORTHO05D000182 7.7e-06 53.1 55 41.8
ATR0559G085 Amborella trichopoda HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 41.8
arahy.Tifrunner.gnm1.ann1.AHSJ27 Arachis hypogaea HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 41.8
arahy.Tifrunner.gnm1.ann1.L393CD Arachis hypogaea HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 41.8
Ciclev10013858m.g Citrus clementina HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 41.8
Thhalv10017980m.g Eutrema salsugineum HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 40.0
MD12G1150600 Malus domestica HOM05D000229 ORTHO05D000182 1.0e-05 52.8 55 43.6


User provided reference genes

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