Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 7.9e-169 597.0 307 100.0
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 4.2e-85 318.9 228 78.1
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 1.6e-84 317.0 255 72.9
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.8e-83 313.5 231 76.6
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.5e-82 309.7 229 75.1
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 1.3e-65 254.2 231 68.4
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 6.3e-49 198.7 239 52.3
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.2e-46 190.3 244 52.5
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 5.9e-39 165.6 255 47.8
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.9e-37 160.6 254 43.3
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 5.5e-37 159.1 223 51.6
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 8.8e-35 151.8 259 42.1
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 4.4e-34 149.4 237 42.6
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 2.2e-33 147.1 236 44.5
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.8e-32 144.1 245 41.2
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.0e-31 140.6 258 38.4
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.0e-30 138.3 252 37.3
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 5.0e-30 136.0 188 48.4
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 6.5e-30 135.6 251 42.2
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 3.2e-29 133.3 241 43.2
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 5.5e-29 132.5 239 43.9
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 1.2e-28 131.3 187 47.6
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 1.4e-27 127.9 252 35.7
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 2.3e-27 127.1 257 37.0
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.2e-27 125.9 247 37.2
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.2e-26 124.8 245 40.4
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 1.5e-26 124.4 234 37.6
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 2.0e-26 124.0 255 38.0
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 9.8e-26 121.7 265 37.4
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 3.7e-25 119.8 225 40.0
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.9e-25 119.4 275 36.4
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.9e-25 119.4 205 40.5
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 8.3e-25 118.6 205 42.0
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 8.3e-25 118.6 205 42.0
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.1e-24 118.2 205 41.5
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.0e-24 115.5 277 35.7
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 7.0e-24 115.5 241 39.8
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 9.2e-24 115.2 259 36.3
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.0e-23 114.0 259 35.5
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 3.5e-23 113.2 197 44.7
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.5e-23 113.2 273 36.3
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.5e-23 113.2 182 44.5
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.0e-22 111.7 253 37.2
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 2.9e-22 110.2 97 55.7
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 3.8e-22 109.8 277 34.7
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.0e-22 109.4 257 32.7
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.6e-22 109.0 273 35.2
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 8.6e-22 108.6 273 35.2
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 8.6e-22 108.6 260 36.9
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 5.6e-21 105.9 215 40.0
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.3e-21 105.5 230 35.7
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 7.3e-21 105.5 209 33.0
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 9.5e-21 105.1 182 41.8
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 3.6e-20 103.2 182 43.4
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 4.7e-20 102.8 172 40.7
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.1e-20 102.4 231 36.4
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.0e-19 101.7 195 35.4
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.4e-19 101.3 185 38.4
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.4e-19 101.3 260 35.0
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.4e-19 101.3 266 33.5
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.8e-19 100.9 261 34.1
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.8e-19 100.9 166 45.2
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 1.8e-19 100.9 227 38.3
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.3e-19 100.5 157 46.5
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 3.0e-19 100.1 96 50.0
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 4.0e-19 99.8 223 37.2
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 5.2e-19 99.4 188 32.4
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 5.2e-19 99.4 97 48.5
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 6.8e-19 99.0 218 34.4
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 8.9e-19 98.6 219 36.5
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 8.9e-19 98.6 239 35.1
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 2.0e-18 97.4 230 35.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.0e-18 97.4 216 37.5
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.6e-18 97.1 253 36.4
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 5.7e-18 95.9 262 35.9
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 9.8e-18 95.1 215 37.7
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.3e-17 94.7 215 37.2
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.9e-17 93.6 167 43.1
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 2.9e-17 93.6 202 36.6
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 3.7e-17 93.2 235 33.2
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.7e-17 93.2 94 46.8
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 4.9e-17 92.8 228 33.3
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 8.3e-17 92.0 102 47.1
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 8.3e-17 92.0 196 39.3
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 8.3e-17 92.0 261 31.0
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.1e-16 91.7 227 32.6
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 1.4e-16 91.3 246 35.8
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.8e-16 90.9 214 35.5
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.8e-16 90.9 262 35.1
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.8e-16 90.9 236 37.3
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 2.4e-16 90.5 193 39.4
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.4e-16 90.5 215 35.3
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 2.4e-16 90.5 74 59.5
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 4.1e-16 89.7 82 51.2
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 5.4e-16 89.4 235 36.6
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 7.0e-16 89.0 180 36.7
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 7.0e-16 89.0 161 38.5
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 1.2e-15 88.2 235 36.2
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 1.2e-15 88.2 192 34.9
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.6e-15 87.8 100 45.0
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 1.6e-15 87.8 214 33.6
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 2.7e-15 87.0 234 38.0
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 2.7e-15 87.0 234 38.0
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 2.7e-15 87.0 234 38.0
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 3.5e-15 86.7 193 39.4
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.6e-15 86.3 237 33.8
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.0e-14 85.1 194 36.6
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.0e-14 85.1 152 42.8
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.0e-14 85.1 144 45.8
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 3.9e-14 83.2 231 32.0
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 8.6e-14 82.0 233 37.3
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.1e-13 81.6 261 31.8
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 1.9e-13 80.9 233 36.9
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 1.6e-12 77.8 309 30.4
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 2.8e-12 77.0 179 41.3
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 6.2e-12 75.9 178 37.1
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 8.9e-11 72.0 216 35.2
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.2e-10 71.6 157 35.0
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.2e-10 71.6 185 34.1
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 3.4e-10 70.1 185 33.0
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 4.4e-10 69.7 142 38.7
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 5.8e-10 69.3 82 43.9
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 1.7e-09 67.8 183 36.6
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 8.3e-09 65.5 241 34.0
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 1.1e-08 65.1 84 36.9
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 1.4e-08 64.7 116 44.0
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 5.4e-08 62.8 152 37.5
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 7.0e-08 62.4 157 35.0
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 9.2e-08 62.0 179 32.4
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 9.2e-08 62.0 159 39.0
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 1.2e-07 61.6 101 32.7
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.2e-07 61.6 120 38.3
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.6e-07 61.2 60 46.7
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.6e-07 61.2 98 43.9
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.7e-07 60.5 160 34.4
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 4.6e-07 59.7 147 37.4
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 1.3e-06 58.2 65 44.6
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 1.7e-06 57.8 93 47.3
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.9e-06 56.6 169 27.8
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.0e-06 56.2 144 34.7
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 8.6e-06 55.5 62 43.5


User provided reference genes

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