Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 1.5e-40 169.1 84 100.0
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 2.0e-34 148.7 82 89.0
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 3.5e-34 147.9 82 86.6
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.0e-33 146.4 82 86.6
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 2.3e-30 135.2 84 75.0
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 4.0e-30 134.4 84 81.0
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 5.2e-30 134.0 79 79.7
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 8.9e-30 133.3 84 77.4
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 8.9e-30 133.3 84 75.0
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 1.2e-29 132.9 84 76.2
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.2e-29 132.9 84 73.8
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.6e-29 131.7 84 73.8
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.6e-29 131.7 84 73.8
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 2.6e-29 131.7 84 73.8
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 5.8e-29 130.6 79 75.9
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 5.8e-29 130.6 85 76.5
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 5.8e-29 130.6 84 73.8
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 7.5e-29 130.2 84 76.2
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 7.5e-29 130.2 84 76.2
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 7.5e-29 130.2 84 76.2
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 9.8e-29 129.8 84 78.6
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 9.8e-29 129.8 81 76.5
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.3e-28 129.4 79 74.7
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.3e-28 129.4 78 79.5
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 1.7e-28 129.0 82 76.8
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.7e-28 129.0 80 76.2
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.7e-28 129.0 79 77.2
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 2.2e-28 128.6 81 75.3
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.2e-28 128.6 84 72.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 2.2e-28 128.6 78 76.9
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.9e-28 128.3 78 76.9
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 2.9e-28 128.3 79 75.9
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 3.7e-28 127.9 84 71.4
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 4.9e-28 127.5 79 77.2
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.1e-27 126.3 84 72.6
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.4e-27 125.9 82 74.4
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 1.4e-27 125.9 82 73.2
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 2.4e-27 125.2 84 70.2
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 3.2e-27 124.8 79 72.2
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 3.2e-27 124.8 79 75.9
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 4.1e-27 124.4 81 72.8
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 4.1e-27 124.4 79 73.4
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 5.4e-27 124.0 82 73.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 5.4e-27 124.0 84 72.6
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 5.4e-27 124.0 84 73.8
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 7.0e-27 123.6 82 72.0
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 9.2e-27 123.2 78 75.6
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.6e-26 122.5 74 78.4
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 2.0e-26 122.1 84 67.9
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 2.7e-26 121.7 77 74.0
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 3.5e-26 121.3 84 67.9
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 3.5e-26 121.3 81 70.4
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 4.6e-26 120.9 84 71.4
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 4.6e-26 120.9 84 71.4
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.6e-26 120.9 84 71.4
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.6e-26 120.9 84 71.4
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 1.7e-25 119.0 82 69.5
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 2.3e-25 118.6 79 70.9
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 3.0e-25 118.2 84 70.2
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 3.0e-25 118.2 143 50.3
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 6.6e-25 117.1 71 78.9
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.9e-24 115.5 84 69.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.9e-24 115.5 78 70.5
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 2.5e-24 115.2 81 69.1
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 3.3e-24 114.8 82 67.1
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 4.3e-24 114.4 75 70.7
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 7.3e-24 113.6 82 67.1
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 1.2e-23 112.8 84 70.2
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.8e-23 111.7 78 70.5
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 3.6e-23 111.3 71 70.4
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 2.3e-22 108.6 85 71.8
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 3.1e-22 108.2 82 64.6
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 5.2e-22 107.5 68 77.9
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 5.2e-22 107.5 131 49.6
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.2e-21 106.3 107 51.4
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.5e-21 105.9 87 58.6
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 2.0e-21 105.5 68 76.5
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.6e-21 105.1 80 62.5
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 2.6e-21 105.1 84 64.3
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 4.4e-21 104.4 106 53.8
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 3.7e-20 101.3 80 60.0
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 3.7e-20 101.3 79 59.5
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 6.4e-20 100.5 80 57.5
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 8.3e-20 100.1 80 58.8
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 8.3e-20 100.1 79 59.5
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 2.4e-19 98.6 80 56.2
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 2.4e-19 98.6 80 56.2
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 2.4e-19 98.6 75 64.0
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 7.1e-19 97.1 79 57.0
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 7.1e-19 97.1 79 57.0
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 7.1e-19 97.1 105 49.5
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.2e-18 96.3 79 57.0
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 2.7e-18 95.1 79 57.0
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 6.6e-17 90.5 78 52.6
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.1e-16 89.7 50 80.0
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 4.3e-16 87.8 84 56.0
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 4.3e-16 87.8 78 51.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 5.6e-16 87.4 70 57.1
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.1e-14 83.2 84 54.8
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.4e-14 82.8 81 49.4
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 6.2e-07 57.4 62 50.0


User provided reference genes

Program Settings