Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 0.0e+00 1229.5 642 100.0
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.1e-292 1007.7 617 84.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 5.3e-284 980.7 617 82.3
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 9.4e-281 969.9 619 81.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.8e-264 915.2 617 78.0
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 3.5e-243 845.1 619 70.6
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.5e-241 839.0 619 70.8
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 7.6e-238 827.4 619 68.5
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 7.6e-230 800.8 620 66.6
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.6e-227 791.6 620 66.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 1.6e-224 783.1 621 67.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.4e-207 726.9 627 64.3
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 8.7e-202 707.6 624 59.9
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.9e-196 689.9 626 60.1
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.6e-192 676.8 611 60.6
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-188 664.1 701 52.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 2.3e-186 656.4 619 55.9
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.5e-182 643.7 620 54.5
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.6e-182 642.9 620 56.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.4e-182 642.5 621 55.4
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 4.5e-182 642.1 677 53.2
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 5.9e-182 641.7 621 55.4
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.1e-179 633.3 619 57.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 2.7e-179 632.9 619 55.3
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.3e-177 625.9 626 53.4
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 6.3e-176 621.7 618 55.0
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.4e-175 620.5 621 54.8
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 5.0e-173 612.1 626 53.4
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.2e-172 609.4 618 54.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 9.4e-172 607.8 626 53.4
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.0e-170 604.4 620 53.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.2e-168 596.7 620 52.9
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.8e-168 596.3 618 53.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.8e-167 593.6 618 52.9
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 3.1e-167 592.8 616 51.3
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 5.3e-167 592.0 618 52.9
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 9.1e-167 591.3 643 52.4
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.5e-166 589.3 624 52.2
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 2.9e-165 586.3 617 52.5
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.9e-165 586.3 617 51.9
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 7.2e-164 581.6 622 51.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 4.7e-163 578.9 620 51.3
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.8e-162 577.0 620 51.3
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.2e-162 575.5 623 52.0
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.0e-161 573.5 618 51.6
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.4e-161 572.4 622 51.4
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 5.7e-161 572.0 621 50.2
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.7e-161 572.0 622 51.3
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.3e-160 570.9 618 50.8
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.2e-160 570.1 621 51.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 3.7e-160 569.3 610 50.0
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 6.3e-160 568.5 631 50.9
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.1e-159 566.2 621 50.9
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 5.4e-159 565.5 621 50.4
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.6e-158 563.9 620 51.0
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.0e-158 563.5 611 50.7
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.2e-157 560.1 537 53.4
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 6.5e-157 558.5 621 49.9
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 5.5e-156 555.4 620 50.5
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.2e-155 554.3 620 51.8
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.7e-155 552.4 618 50.0
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.8e-154 550.4 643 47.1
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 7.5e-153 545.0 620 50.0
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 6.3e-152 542.0 650 47.2
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.8e-151 540.4 627 47.8
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 7.8e-150 535.0 623 48.2
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 8.6e-149 531.6 627 48.6
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.5e-148 530.8 620 47.4
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.9e-148 530.4 626 48.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.3e-148 529.3 640 49.2
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-147 527.7 674 46.4
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 3.6e-147 526.2 623 47.5
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 8.0e-147 525.0 621 48.3
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.4e-146 524.2 621 49.0
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 5.2e-146 522.3 624 48.2
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.5e-145 520.8 622 49.0
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 4.4e-145 519.2 636 46.7
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 1.3e-144 517.7 620 47.9
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-144 516.5 532 52.3
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 3.7e-144 516.2 622 48.6
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-143 514.6 622 48.4
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-143 513.8 622 48.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 5.4e-143 512.3 620 47.7
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 2.3e-141 506.9 626 47.6
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 3.0e-141 506.5 621 47.3
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 5.0e-141 505.8 622 47.7
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 5.0e-141 505.8 625 48.2
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 5.0e-141 505.8 622 47.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 2.5e-140 503.4 629 46.9
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 3.3e-140 503.1 620 47.1
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-139 501.1 620 46.9
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.8e-139 500.0 693 43.6
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 6.2e-139 498.8 631 46.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 8.0e-139 498.4 393 67.7
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.0e-137 493.8 619 45.2
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.4e-137 493.0 539 50.6
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 5.8e-137 492.3 621 45.2
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.9e-136 490.0 614 47.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 6.2e-131 472.2 613 42.1
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 4.4e-129 466.1 469 53.7
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.9e-128 462.6 630 46.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.4e-127 461.1 621 45.7
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.2e-126 458.0 671 40.8
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.1e-124 451.4 631 42.5
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 5.6e-116 422.5 494 48.0
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 9.9e-113 411.8 626 39.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.4e-112 408.7 617 41.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.6e-110 404.4 617 41.5
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.3e-109 401.4 619 41.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.0e-106 389.8 457 48.1
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.0e-106 388.7 448 48.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.0e-106 388.7 448 48.9
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-104 383.6 354 55.1
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 5.3e-98 362.8 633 36.5
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.4e-97 360.1 526 41.6
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.0e-93 347.1 665 34.9
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-86 324.3 612 37.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.2e-83 314.3 683 34.0
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 6.3e-83 312.8 522 41.0
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 8.2e-83 312.4 343 52.5
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.4e-82 310.8 274 54.7
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.2e-81 308.5 371 48.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.2e-78 298.5 368 45.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 1.2e-78 298.5 458 41.7
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.6e-78 297.0 650 32.9
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.6e-78 297.0 650 32.9
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.8e-75 287.3 372 48.1
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.2e-75 285.8 372 47.8
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.4e-61 241.9 241 56.8
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.6e-60 237.7 222 54.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 3.7e-59 233.8 620 31.6
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.7e-56 224.9 622 30.9
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 3.5e-49 200.7 333 34.5
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.0e-48 196.8 396 38.1
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.7e-43 181.8 223 48.4
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 7.0e-42 176.4 371 37.7
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.0e-41 174.9 537 30.2
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.3e-40 171.4 194 50.5
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 3.8e-40 170.6 141 57.4
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 6.6e-40 169.9 141 55.3
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.4e-36 157.5 154 53.9
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 9.8e-36 156.0 450 30.7
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.3e-35 155.6 230 43.5
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 2.7e-33 147.9 119 56.3
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.9e-33 146.7 174 45.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.1e-30 138.3 119 58.0
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.0e-29 136.0 189 44.4
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.6e-28 131.3 231 37.7
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.4e-28 131.0 117 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.2e-27 128.3 319 33.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 8.3e-27 126.3 179 46.4
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 6.6e-24 116.7 104 52.9
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-23 115.9 104 51.9
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.6e-22 112.1 133 43.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 8.0e-22 109.8 181 42.5
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.3e-21 108.2 116 47.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.0e-20 105.1 108 54.6
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 7.5e-20 103.2 65 81.5
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.8e-20 102.8 186 38.2
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 1.4e-18 99.0 89 57.3
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.4e-18 98.2 82 53.7
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 3.2e-18 97.8 82 53.7
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 3.2e-18 97.8 82 53.7
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-17 95.9 88 48.9
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 3.5e-17 94.4 89 56.2
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 3.5e-17 94.4 55 78.2
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 6.0e-17 93.6 131 39.7
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.0e-16 92.8 185 37.8
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.3e-16 91.7 82 51.2
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.6e-14 85.5 79 53.2
TPR.G23814 Trifolium pratense HOM05D003594 ORTHO05D411989 2.8e-14 84.7 68 64.7
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 3.6e-14 84.3 72 54.2
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 4.7e-14 84.0 81 59.3
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 6.2e-14 83.6 177 36.7
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 8.1e-14 83.2 72 52.8
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 8.1e-14 83.2 116 40.5
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.2e-13 80.5 69 59.4
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 5.8e-12 77.0 47 78.7
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.3e-11 75.9 82 57.3
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.2e-11 75.1 60 60.0
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.7e-11 74.3 102 49.0
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 6.0e-09 67.0 57 52.6
Aa31LG6G5510 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.3e-08 65.9 79 45.6
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 3.9e-08 64.3 99 39.4
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 4.3e-07 60.8 95 40.0
MSTRG.18917 Avicennia marina HOM05D003594 ORTHO05D026973 2.8e-06 58.2 96 41.7


User provided reference genes

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