Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 0.0e+00 1256.5 635 100.0
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 0.0e+00 1091.3 618 88.8
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 0.0e+00 1082.8 616 88.1
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.4e-305 1052.4 614 86.5
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 1.6e-301 1038.9 615 83.9
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 2.0e-299 1031.9 613 83.7
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 6.4e-298 1026.9 613 83.5
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 6.2e-293 1010.4 614 82.1
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 3.4e-291 1004.6 611 81.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.9e-289 998.8 614 82.2
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 9.7e-262 906.7 610 73.0
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 6.3e-261 904.0 610 73.1
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 6.3e-261 904.0 615 72.7
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.5e-259 899.4 615 71.9
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 2.6e-259 898.7 615 72.2
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 5.9e-259 897.5 610 73.4
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 1.0e-258 896.7 610 72.8
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.3e-258 896.3 615 72.5
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.7e-258 896.0 618 72.3
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.0e-258 894.4 610 72.1
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 4.2e-257 891.3 610 72.8
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 6.1e-256 887.5 610 72.0
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 7.9e-256 887.1 610 71.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 1.0e-255 886.7 623 70.9
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.8e-255 885.9 615 71.4
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.9e-255 884.8 615 71.2
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.6e-254 882.1 615 72.2
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 7.4e-254 880.6 620 70.2
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.7e-253 879.4 615 71.2
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.7e-253 879.4 607 70.8
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 2.2e-253 879.0 617 71.3
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 6.3e-253 877.5 610 71.5
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 6.3e-253 877.5 607 70.5
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 2.6e-251 872.1 616 70.6
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.1e-249 866.7 613 69.3
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 2.5e-249 865.5 612 70.9
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 3.2e-249 865.1 611 69.7
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 5.5e-249 864.4 613 69.7
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.8e-247 859.4 616 68.8
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 5.2e-247 857.8 610 69.2
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 7.5e-246 854.0 617 69.7
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.8e-245 852.0 625 68.3
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.8e-244 849.4 615 68.1
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 3.1e-244 848.6 619 68.2
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 2.2e-242 842.4 613 67.2
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 3.0e-239 832.0 616 66.1
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 3.1e-236 822.0 613 67.5
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.0e-235 819.3 616 66.1
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 5.9e-235 817.8 617 66.8
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 2.3e-234 815.8 628 65.4
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 8.8e-231 803.9 611 66.4
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 8.8e-231 803.9 544 72.6
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.5e-230 803.1 626 65.3
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 2.0e-230 802.7 624 65.1
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 7.5e-230 800.8 626 65.2
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 6.3e-229 797.7 618 64.9
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.1e-228 797.0 617 65.5
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 9.2e-228 793.9 616 63.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 9.2e-228 793.9 616 63.6
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.2e-227 793.5 615 64.7
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 4.5e-227 791.6 616 63.5
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 4.5e-227 791.6 610 65.9
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 6.6e-226 787.7 613 63.6
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 1.9e-225 786.2 613 64.3
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 2.5e-225 785.8 563 69.1
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 3.3e-225 785.4 627 62.5
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.2e-224 783.5 619 62.5
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 1.6e-224 783.1 618 64.1
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 6.1e-224 781.2 611 63.5
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.0e-223 780.4 613 63.3
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 1.4e-223 780.0 613 63.6
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 3.0e-223 778.9 613 63.5
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 3.4e-222 775.4 613 63.3
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 1.7e-221 773.1 628 63.4
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 5.4e-220 768.1 622 63.8
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.2e-219 766.9 612 62.7
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 2.1e-216 756.1 618 62.0
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 3.6e-216 755.4 618 62.3
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 4.7e-216 755.0 619 63.7
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 1.1e-215 753.8 558 66.3
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.3e-213 746.9 618 61.7
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 8.3e-213 744.2 626 60.4
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 3.0e-210 735.7 618 60.7
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 3.0e-210 735.7 624 62.0
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 2.5e-209 732.6 619 60.7
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 2.5e-209 732.6 617 60.8
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 3.3e-209 732.3 524 69.1
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 8.9e-207 724.2 654 59.9
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.2e-195 687.2 620 60.2
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 4.9e-189 665.2 565 60.9
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 1.7e-181 640.2 629 55.0
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 6.4e-181 638.3 626 56.1
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 1.9e-180 636.7 617 56.4
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.9e-180 636.7 584 59.1
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 5.4e-180 635.2 647 55.0
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 4.0e-175 619.0 613 56.3
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 1.0e-165 587.8 573 55.1
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 8.4e-165 584.7 441 67.3
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 6.1e-155 552.0 503 57.7
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 3.0e-154 549.7 630 48.6
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 1.9e-148 530.4 613 46.0
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 2.0e-145 520.4 640 44.1
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.3e-144 517.7 617 47.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 2.2e-141 506.9 617 44.2
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.0e-114 416.8 614 38.4
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 2.2e-96 357.5 340 58.5
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 5.1e-85 319.7 220 69.5
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 1.5e-57 228.4 289 45.0
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 2.6e-49 201.1 141 67.4
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 1.4e-47 195.3 110 85.5
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.9e-47 194.9 131 74.8
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.2e-46 192.2 110 84.5
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.5e-44 184.5 188 54.3
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.1e-39 169.1 156 57.7
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 5.7e-36 156.8 233 41.2
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.3e-35 155.6 105 72.4
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 4.1e-34 150.6 160 51.9
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 9.1e-34 149.4 88 80.7
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.9e-33 146.7 155 51.6
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 7.7e-33 146.4 91 74.7
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.9e-32 144.4 155 51.6
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 3.2e-31 141.0 89 74.2
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 7.2e-31 139.8 101 68.3
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 4.7e-30 137.1 224 34.8
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 9.7e-28 129.4 82 75.6
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 7.7e-25 119.8 80 72.5
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.7e-19 102.1 57 80.7
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 7.0e-18 96.7 56 76.8
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 1.6e-17 95.5 54 85.2
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 5.9e-17 93.6 81 54.3
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 8.5e-16 89.7 469 23.0
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.2e-15 87.8 49 81.6
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 1.6e-14 85.5 243 27.2
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 6.1e-14 83.6 90 46.7


User provided reference genes

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