Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8743 Trifolium pratense HOM05D008222 ORTHO05D010364 0.0e+00 1327.0 672 100.0
Medtr1g058110 Medicago truncatula HOM05D008222 ORTHO05D010364 1.4e-218 763.5 681 65.5
Glyma.02G200000 Glycine max HOM05D008222 ORTHO05D010364 2.5e-183 646.4 691 56.2
Glyma.10G076700 Glycine max HOM05D008222 ORTHO05D010364 4.1e-170 602.4 691 53.3
Lj5g0010690 Lotus japonicus HOM05D008222 ORTHO05D010364 8.1e-166 588.2 691 53.1
Phvul.007G270200 Phaseolus vulgaris HOM05D008222 ORTHO05D010364 2.5e-135 486.9 692 46.5
VMungo0720G0042 Vigna mungo HOM05D008222 ORTHO05D010364 6.7e-128 462.2 693 45.2
Haze_19673 Corylus avellana HOM05D008222 ORTHO05D010364 5.3e-109 399.4 709 42.2
Cfa016663 Carpinus fangiana HOM05D008222 ORTHO05D010364 7.7e-108 395.6 711 41.1
QL07p037571 Quercus lobata HOM05D008222 ORTHO05D010364 1.3e-91 341.7 714 38.2
Dinv31739 Davidia involucrata HOM05D008222 ORTHO05D010364 1.1e-90 338.6 714 37.3
CiPaw.10G014900 Carya illinoinensis HOM05D008222 ORTHO05D010364 3.1e-85 320.5 706 37.8
GSVIVG01033924001 Vitis vinifera HOM05D008222 ORTHO05D010364 5.9e-84 316.2 698 36.8
Thecc.05G099900 Theobroma cacao HOM05D008222 ORTHO05D010364 1.0e-83 315.5 703 38.4
Atru.chr8.1411 Acer truncatum HOM05D008222 ORTHO05D010364 1.5e-82 311.6 749 36.3
TAR633G2678 Trochodendron aralioides HOM05D008222 ORTHO05D010364 8.0e-81 305.8 723 35.4
Cpa.g.sc104.69 Carica papaya HOM05D008222 ORTHO05D010364 3.1e-77 293.9 717 36.5
Manes.09G049300 Manihot esculenta HOM05D008222 ORTHO05D010364 4.1e-77 293.5 699 36.3
TAR636G2750 Trochodendron aralioides HOM05D008222 ORTHO05D010364 5.0e-75 286.6 706 34.1
Ciclev10011213m.g Citrus clementina HOM05D008222 ORTHO05D010364 6.6e-75 286.2 704 36.6
Lj1C1035T2 Lonicera japonica HOM05D008222 ORTHO05D010364 3.6e-73 280.4 702 35.9
Potri.006G205800 Populus trichocarpa HOM05D008222 ORTHO05D010364 1.0e-72 278.9 708 35.6
Sabra06G0158800 Salix brachista HOM05D008222 ORTHO05D010364 1.2e-71 275.4 703 35.4
TWI77G0950 Tripterygium wilfordii HOM05D008222 ORTHO05D010364 2.6e-71 274.2 719 34.6
COL.COLO4_29620 Corchorus olitorius HOM05D008222 ORTHO05D010364 1.3e-70 271.9 713 35.8
CSS0016714 Camellia sinensis var. sinensis HOM05D008222 ORTHO05D010364 7.8e-68 262.7 733 34.1
Oeu010753.1 Olea europaea HOM05D008222 ORTHO05D010364 1.3e-67 261.9 688 33.7
Nn6g34773 Nelumbo nucifera HOM05D008222 ORTHO05D010364 4.7e-65 253.4 708 32.3
Oeu010756.1 Olea europaea HOM05D008222 ORTHO05D010364 1.1e-64 252.3 686 32.5
FAN05G0526 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.4e-64 251.9 695 33.2
CANSAT64G2035 Cannabis sativa HOM05D008222 ORTHO05D010364 1.8e-64 251.5 767 31.6
DCAR_020725 Daucus carota HOM05D008222 ORTHO05D010364 1.5e-63 248.4 724 34.1
FvH4_6g19810 Fragaria vesca HOM05D008222 ORTHO05D010364 6.4e-62 243.0 686 33.5
FAN02G2041 Fragaria x ananassa HOM05D008222 ORTHO05D010364 8.3e-62 242.7 694 32.9
FAN14G0765 Fragaria x ananassa HOM05D008222 ORTHO05D010364 8.3e-62 242.7 686 33.5
FAN05G0780 Fragaria x ananassa HOM05D008222 ORTHO05D010364 1.1e-61 242.3 694 32.9
FAN09G4126 Fragaria x ananassa HOM05D008222 ORTHO05D010364 3.3e-58 230.7 694 32.6
RcHm_v2.0_Chr3g0475181 Rosa chinensis HOM05D008222 ORTHO05D010364 7.3e-58 229.6 694 34.3
AUR62006264 Chenopodium quinoa HOM05D008222 ORTHO05D010364 5.8e-55 219.9 736 31.8
MSTRG.10386 Avicennia marina HOM05D008222 ORTHO05D010364 7.5e-55 219.5 689 32.2
MBI17_g16777_MAGBIO Magnolia biondii HOM05D008222 ORTHO05D010364 7.1e-53 213.0 684 31.6
CiPaw.09G018200 Carya illinoinensis HOM05D008222 ORTHO05D010364 7.8e-52 209.5 601 35.3
Oeu060355.1 Olea europaea HOM05D008222 ORTHO05D010364 3.0e-51 207.6 719 31.3
MD12G1033800 Malus domestica HOM05D008222 ORTHO05D010364 1.6e-49 201.8 594 32.0
Hund03869 Selenicereus undatus HOM05D008222 ORTHO05D010364 2.6e-47 194.5 791 30.0
AUR62028514 Chenopodium quinoa HOM05D008222 ORTHO05D010364 3.8e-46 190.7 822 29.4
EL10Ac7g16820 Beta vulgaris HOM05D008222 ORTHO05D010364 1.7e-43 181.8 809 26.6
Lalb_Chr02g0154681 Lupinus albus HOM05D008222 ORTHO05D010364 2.4e-40 171.4 347 37.8
Sc20g0006580 Simmondsia chinensis HOM05D008222 ORTHO05D010364 1.5e-39 168.7 685 27.7
Oeu010754.1 Olea europaea HOM05D008222 ORTHO05D010364 1.0e-35 156.0 514 29.8
SGA_v2.0_scaffold184G40000 Striga asiatica HOM05D008222 ORTHO05D010364 1.5e-31 142.1 675 28.1
HPP92_009786 Vanilla planifolia HOM05D008222 ORTHO05D010364 3.4e-31 141.0 686 26.5
Aqoxy4G02694 Aquilegia oxysepala HOM05D008222 ORTHO05D010364 1.4e-29 135.6 723 27.9
CDE06G1815 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 4.2e-29 134.0 675 25.6
Os02g0536400 Oryza sativa ssp. japonica HOM05D008222 ORTHO05D010364 7.1e-29 133.3 721 25.9
SEGI_05246 Sequoiadendron giganteum HOM05D008222 ORTHO05D010364 7.4e-26 123.2 778 25.2
Psat6g082000 Pisum sativum HOM05D008222 ORTHO05D010364 9.6e-26 122.9 131 57.3
CDE08G0440 Ceratophyllum demersum HOM05D008222 ORTHO05D010364 2.6e-23 114.8 695 26.8
ECA233G4923 Erigeron canadensis HOM05D008222 ORTHO05D010364 2.4e-21 108.2 275 30.5
ATR0772G019 Amborella trichopoda HOM05D008222 ORTHO05D010364 3.1e-16 91.3 732 23.8
unitig_8.g3557 Utricularia gibba HOM05D008222 ORTHO05D010364 2.6e-15 88.2 248 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1895 Anthoceros agrestis HOM05D008222 ORTHO05D010364 2.3e-11 75.1 52 63.5
CARHR132250 Cardamine hirsuta HOM05D002912 ORTHO05D003191 5.0e-06 57.4 84 39.3
CARHR163400 Cardamine hirsuta HOM05D002912 ORTHO05D003191 6.5e-06 57.0 85 40.0
Zm00001eb217310 Zea mays HOM05D003978 ORTHO05D006033 8.5e-06 56.6 101 30.7


User provided reference genes

Program Settings