Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 0.0e+00 2568.5 1340 100.0
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 0.0e+00 2239.2 1580 77.2
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 0.0e+00 2204.1 1582 76.4
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 0.0e+00 2097.0 1582 72.6
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 0.0e+00 2065.8 1583 71.3
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 0.0e+00 2057.7 1575 71.5
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 0.0e+00 1995.3 1543 70.9
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 0.0e+00 1983.8 1670 66.3
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 0.0e+00 1904.0 1461 71.5
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 0.0e+00 1823.5 1576 64.1
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 0.0e+00 1797.3 1597 63.1
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 0.0e+00 1792.3 1587 62.6
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 0.0e+00 1785.4 1576 62.6
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 0.0e+00 1784.2 1565 63.2
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 0.0e+00 1782.7 1594 62.0
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 0.0e+00 1779.2 1601 61.9
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 0.0e+00 1776.5 1580 63.2
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 0.0e+00 1764.6 1599 61.2
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 0.0e+00 1756.5 1547 63.2
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 0.0e+00 1751.1 1603 60.5
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 0.0e+00 1739.2 1585 60.4
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 0.0e+00 1736.5 1569 61.7
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 0.0e+00 1736.5 1590 60.8
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 0.0e+00 1730.7 1584 60.9
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 0.0e+00 1728.8 1585 60.8
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 0.0e+00 1725.7 1585 60.9
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 0.0e+00 1724.1 1586 60.8
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 0.0e+00 1723.8 1585 60.4
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 0.0e+00 1719.1 1584 61.1
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 0.0e+00 1717.6 1584 60.2
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 0.0e+00 1716.0 1584 60.5
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 0.0e+00 1714.9 1584 60.5
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 0.0e+00 1714.5 1570 64.1
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 0.0e+00 1709.9 1583 60.3
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 0.0e+00 1707.6 1598 59.9
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 0.0e+00 1699.9 1577 60.5
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 0.0e+00 1699.1 1577 60.3
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 0.0e+00 1692.6 1581 59.4
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 0.0e+00 1687.9 1591 59.3
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 0.0e+00 1686.8 1570 59.7
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 0.0e+00 1683.7 1594 58.6
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 0.0e+00 1682.9 1595 58.7
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 0.0e+00 1667.9 1587 58.0
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 0.0e+00 1663.7 1507 61.2
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 0.0e+00 1662.1 1501 61.8
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 0.0e+00 1659.0 1620 59.6
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 0.0e+00 1656.0 1580 59.2
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 0.0e+00 1655.6 1593 58.6
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 0.0e+00 1652.1 1788 54.3
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 0.0e+00 1650.2 1533 59.4
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 0.0e+00 1647.1 1567 58.2
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 0.0e+00 1645.2 1569 58.3
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 0.0e+00 1644.0 1573 58.4
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 0.0e+00 1641.3 1600 57.8
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 0.0e+00 1640.2 1573 58.3
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 0.0e+00 1639.8 1573 58.0
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 0.0e+00 1639.0 1573 58.0
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 0.0e+00 1636.7 1569 58.2
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 0.0e+00 1635.9 1598 57.0
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 0.0e+00 1634.8 1569 57.9
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 0.0e+00 1633.2 1569 57.7
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 0.0e+00 1629.4 1585 57.7
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 0.0e+00 1628.2 1585 58.5
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 0.0e+00 1626.7 1569 57.9
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 0.0e+00 1609.0 1578 56.6
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 0.0e+00 1609.0 1591 57.5
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 0.0e+00 1607.0 1570 57.7
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 0.0e+00 1605.5 1580 56.4
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 0.0e+00 1602.4 1574 57.9
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 0.0e+00 1602.4 1590 58.0
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 0.0e+00 1601.6 1601 57.4
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 0.0e+00 1601.3 1505 58.4
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 0.0e+00 1593.6 1589 57.5
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 0.0e+00 1592.4 1592 56.0
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 0.0e+00 1580.5 1551 57.1
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 0.0e+00 1573.5 1582 56.6
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 0.0e+00 1573.1 1569 56.9
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 0.0e+00 1568.1 1490 59.6
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 0.0e+00 1557.3 1580 55.6
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 0.0e+00 1553.1 1546 57.4
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 0.0e+00 1550.8 1449 60.4
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 0.0e+00 1548.5 1579 55.2
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 0.0e+00 1548.5 1448 60.1
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 0.0e+00 1508.4 1713 51.4
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 0.0e+00 1481.5 1648 52.1
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 0.0e+00 1468.8 1559 52.7
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 0.0e+00 1455.7 1390 58.9
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 0.0e+00 1395.6 1589 50.3
Atru.chr8.1720 Acer truncatum HOM05D003842 ORTHO05D004436 0.0e+00 1371.3 983 73.2
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 0.0e+00 1344.3 1396 55.8
Psat3g040240 Pisum sativum HOM05D003842 ORTHO05D004436 1.0e-305 1053.9 597 92.1
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 2.2e-279 966.5 1582 38.2
Pp3c2_21970 Physcomitrium patens HOM05D003842 ORTHO05D004436 3.5e-269 932.6 1585 37.9
DCAR_020802 Daucus carota HOM05D003842 ORTHO05D004436 5.0e-268 928.7 1412 43.9
SMO137G0253 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 1.5e-200 704.5 1404 35.4
CBR_g53950 Chara braunii HOM05D003842 ORTHO05D004436 1.1e-195 688.3 1510 33.3
SMO207G0008 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 1.4e-193 681.4 1515 34.2
Psat3g040280 Pisum sativum HOM05D003842 ORTHO05D004436 4.5e-176 623.2 340 93.5
Hma1.2p1_0547F.1_g176440 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 2.8e-170 604.0 724 51.0
HPP92_022597 Vanilla planifolia HOM05D003842 ORTHO05D004436 5.7e-163 579.7 802 45.4
Pp3c22_4780 Physcomitrium patens HOM05D003842 ORTHO05D004436 3.8e-159 567.0 936 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 1.1e-158 565.5 759 43.1
COL.COLO4_26898 Corchorus olitorius HOM05D003842 ORTHO05D004436 5.2e-156 556.6 985 40.5
Actinidia26647 Actinidia chinensis HOM05D003842 ORTHO05D004436 4.3e-118 430.6 282 76.6
vmacro07325 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 4.0e-116 424.1 388 59.3
Hma1.2p1_0547F.1_g176430 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 6.6e-111 406.8 613 44.7
Psat0s1048g0160 Pisum sativum HOM05D003842 ORTHO05D004436 6.9e-100 370.2 206 93.7
Ca_29803_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 1.3e-98 365.9 194 94.3
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 2.7e-96 358.2 479 48.0
Medtr7g031800 Medicago truncatula HOM05D003842 ORTHO05D004436 6.5e-90 337.0 182 94.5
Hund20322 Selenicereus undatus HOM05D003842 ORTHO05D004436 3.2e-89 334.7 231 72.7
Atru.chr8.1723 Acer truncatum HOM05D003842 ORTHO05D004436 7.9e-80 303.5 204 74.0
Ca_29497_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.3e-70 271.6 143 93.7
arahy.Tifrunner.gnm1.ann1.1KP53S Arachis hypogaea HOM05D003842 ORTHO05D004436 1.8e-63 249.2 171 76.0
Ciclev10024523m.g Citrus clementina HOM05D003842 ORTHO05D004436 7.2e-57 227.3 216 58.8
arahy.Tifrunner.gnm1.ann1.Z63BRR Arachis hypogaea HOM05D003842 ORTHO05D004436 2.1e-56 225.7 162 74.7
Hma1.2p1_0547F.1_g176420 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 8.8e-55 220.3 144 77.1
Actinidia28925 Actinidia chinensis HOM05D003842 ORTHO05D004436 8.3e-53 213.8 144 74.3
MD12G1105200 Malus domestica HOM05D003842 ORTHO05D004436 1.4e-52 213.0 148 73.6
arahy.Tifrunner.gnm1.ann1.XM7FE2 Arachis hypogaea HOM05D003842 ORTHO05D004436 1.7e-50 206.1 129 82.2
SEGI_39450 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 3.8e-42 178.3 154 53.9
SEGI_23674 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 8.6e-42 177.2 157 52.9
Actinidia26645 Actinidia chinensis HOM05D003842 ORTHO05D004436 3.3e-41 175.3 125 66.4
Actinidia28926 Actinidia chinensis HOM05D003842 ORTHO05D004436 2.1e-40 172.6 131 67.2
CDE07G0362 Ceratophyllum demersum HOM05D003842 ORTHO05D004436 3.6e-40 171.8 156 57.1
Atru.chr8.1722 Acer truncatum HOM05D003842 ORTHO05D004436 8.0e-40 170.6 100 84.0
CDE07G0268 Ceratophyllum demersum HOM05D003842 ORTHO05D004436 3.4e-38 165.2 209 45.9
Ca_31348_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 8.3e-37 160.6 83 92.8
SEGI_09433 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 2.4e-36 159.1 157 49.7
FAN14G4492 Fragaria x ananassa HOM05D003842 ORTHO05D004436 9.2e-36 157.1 113 67.3
C04p00360 Brassica napus HOM05D003842 ORTHO05D004436 6.6e-34 151.0 139 59.0
BolC4t21681H Brassica oleracea HOM05D003842 ORTHO05D004436 6.6e-34 151.0 139 59.0
QL01p037008 Quercus lobata HOM05D003842 ORTHO05D050616 8.9e-31 140.6 137 57.7
Gohir.A09G144350 Gossypium hirsutum HOM05D003842 ORTHO05D004436 1.3e-29 136.7 88 75.0
MBI16_g06660_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 8.3e-29 134.0 95 68.4
Cpa.g.sc5.149 Carica papaya HOM05D003842 ORTHO05D004436 1.6e-27 129.8 80 81.2
MBI17_g12240_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 1.1e-25 123.6 80 73.8
MBI15_g45591_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 1.9e-25 122.9 106 58.5
Phvul.009G007800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 4.3e-25 121.7 93 72.0
arahy.Tifrunner.gnm1.ann1.G8MIGD Arachis hypogaea HOM05D003842 ORTHO05D004436 7.3e-25 120.9 146 52.1
FAN14G4083 Fragaria x ananassa HOM05D003842 ORTHO05D004436 9.5e-25 120.6 88 65.9
Zm00001eb403350 Zea mays HOM05D003842 ORTHO05D004436 2.8e-24 119.0 118 54.2
Glyma.03G186800 Glycine max HOM05D003842 ORTHO05D004436 2.3e-23 115.9 72 81.9
MBI03_g13096_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 2.3e-23 115.9 163 44.8
Actinidia26646 Actinidia chinensis HOM05D003842 ORTHO05D004436 1.2e-22 113.6 78 74.4
MBI15_g35614_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 4.1e-20 105.1 86 60.5
COL.COLO4_26897 Corchorus olitorius HOM05D003842 ORTHO05D004436 3.5e-19 102.1 57 91.2
MBI05_g20002_MAGBIO Magnolia biondii HOM05D000695 ORTHO05D004436 3.5e-19 102.1 80 60.0
MBI19_g13910_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 7.8e-19 100.9 82 59.8
Hund20324 Selenicereus undatus HOM05D003842 ORTHO05D004436 3.6e-16 92.0 50 92.0
MBI05_g14868_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 6.2e-16 91.3 85 54.1
Actinidia12419 Actinidia chinensis HOM05D003842 ORTHO05D004436 2.3e-15 89.4 100 52.0
Hma1.2p1_0705F.1_g207000 Hydrangea macrophylla HOM05D000895 ORTHO05D011925 5.8e-14 84.7 58 70.7
Lsat_1_v5_gn_9_56200 Lactuca sativa HOM05D003842 ORTHO05D004436 9.9e-14 84.0 55 63.6
Actinidia28924 Actinidia chinensis HOM05D003842 ORTHO05D004436 4.9e-13 81.6 57 63.2
Lsat_1_v5_gn_3_105861 Lactuca sativa HOM05D001499 ORTHO05D001560 4.9e-13 81.6 55 60.0
Lsat_1_v5_gn_9_14660 Lactuca sativa HOM05D003842 ORTHO05D004436 8.4e-13 80.9 55 61.8
Lsat_1_v5_gn_1_74980 Lactuca sativa HOM05D003842 ORTHO05D004436 4.6e-11 75.1 150 36.0
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 6.0e-11 74.7 79 53.2
MBI18_g37353_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 6.6e-10 71.2 49 71.4
CAN.G588.41 Capsicum annuum HOM05D000517 ORTHO05D000751 1.1e-09 70.5 50 72.0
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 1.5e-09 70.1 48 75.0
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 3.3e-09 68.9 48 72.9
CBR_g37399 Chara braunii HOM05D003842 ORTHO05D004436 3.3e-09 68.9 95 36.8
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 1.6e-08 66.6 47 72.3
arahy.Tifrunner.gnm1.ann1.Z72FSA Arachis hypogaea HOM05D003842 ORTHO05D026908 1.6e-08 66.6 47 72.3
QL07p042601 Quercus lobata HOM05D003842 ORTHO05D004436 9.9e-06 57.4 53 58.5


User provided reference genes

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