Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 2106.6 1088 100.0
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1822.0 1096 87.7
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1811.6 1094 87.2
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1735.7 1093 84.4
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1665.2 1095 80.0
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1597.8 1098 78.0
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1591.6 1098 77.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1562.0 1098 75.5
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1556.6 1097 75.1
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1550.0 1098 75.9
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1543.1 1099 75.5
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1541.6 1099 74.8
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1539.6 1100 75.3
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1526.5 1098 74.3
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1518.8 1100 74.0
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1513.8 1097 73.7
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1496.9 1101 72.5
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1494.9 1101 73.2
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1493.8 1102 72.7
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1483.8 1101 72.7
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1480.3 1098 72.7
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1383.6 1102 67.3
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1364.4 1103 67.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1350.1 1106 66.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1348.2 1100 65.5
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1347.4 1100 65.7
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1343.9 1100 65.5
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1342.0 1100 65.1
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1338.6 1100 65.2
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1333.5 1105 65.6
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1332.8 1100 65.1
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1332.4 1107 66.0
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1324.7 953 73.2
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1319.3 1099 65.5
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1313.1 1104 66.4
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1312.4 1103 64.5
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 1309.3 1107 65.9
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1308.5 1100 64.2
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1308.1 1104 64.4
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1301.2 1102 64.7
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1294.3 1103 64.0
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1290.8 1101 64.6
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1288.5 1105 64.3
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1286.9 1113 64.2
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1280.8 1102 64.0
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1278.8 1125 64.0
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1272.3 1105 62.7
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1263.1 1102 62.0
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1259.2 1101 62.8
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1255.4 1100 62.5
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1255.0 1100 61.9
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1253.0 1096 62.5
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1241.9 1098 61.3
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1241.5 1097 63.4
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1241.1 1101 61.8
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1239.6 1100 61.2
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1239.2 1100 61.3
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1237.6 1105 61.7
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1235.3 1100 61.5
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1233.8 1100 61.6
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1233.8 1102 59.6
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1233.0 1100 61.5
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1232.6 1103 60.8
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1221.1 1092 59.5
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1218.8 1100 60.4
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1217.6 1099 59.3
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1215.3 1099 60.8
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1215.3 1101 59.1
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1211.1 1102 60.4
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1208.7 1100 58.8
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1208.4 1019 64.7
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1205.3 1101 58.9
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1204.1 1107 60.6
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1193.3 1102 58.9
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 0.0e+00 1190.6 1099 58.8
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 0.0e+00 1190.3 1086 60.7
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1189.9 1092 59.3
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1189.1 1099 60.6
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1186.4 1113 58.8
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1182.9 1100 57.7
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1180.6 1101 57.6
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1179.9 1094 59.9
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1179.9 1095 60.7
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1169.1 1098 57.7
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1163.3 1116 58.4
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1162.5 1097 58.7
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1156.4 1108 58.3
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1155.2 1104 57.2
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1154.8 1098 58.4
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1152.9 1105 57.3
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1151.0 1101 57.1
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 0.0e+00 1134.8 1111 57.2
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 0.0e+00 1134.4 1102 56.9
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 0.0e+00 1134.0 1102 57.3
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 0.0e+00 1133.2 1112 57.1
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 0.0e+00 1132.5 1101 57.0
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 0.0e+00 1128.6 1114 57.4
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 0.0e+00 1128.2 1113 57.3
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1121.7 1118 57.2
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1118.6 1113 57.1
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1118.6 1115 57.0
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1118.6 1113 57.1
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1118.6 1115 57.0
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1116.7 1113 57.1
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1116.7 1104 56.2
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 0.0e+00 1115.5 1112 56.4
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 0.0e+00 1109.0 1113 56.4
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1107.8 836 68.9
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 0.0e+00 1107.8 842 69.8
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1100.5 1101 55.9
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1098.6 1117 55.4
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 0.0e+00 1092.4 1111 56.0
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1090.5 1107 56.0
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1090.1 1113 55.5
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 0.0e+00 1087.4 1107 55.1
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1087.0 1100 55.5
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1085.5 1113 55.6
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1084.3 1107 55.4
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1084.3 1107 55.4
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1083.9 1105 54.8
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1080.5 1161 53.7
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1078.9 1095 55.5
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 2.6e-310 1068.9 1106 55.7
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 4.8e-309 1064.7 1114 54.7
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 4.5e-307 1058.1 936 62.4
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 5.9e-307 1057.7 1161 53.0
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 1.8e-295 1019.6 1108 53.0
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.7e-293 1013.1 1100 52.9
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 8.3e-293 1010.7 1094 52.6
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 1.5e-289 1000.0 1081 53.2
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.6e-288 996.5 1090 51.8
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 5.2e-287 991.5 1112 50.5
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 9.2e-284 980.7 1105 50.7
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.3e-250 870.5 697 66.9
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.8e-250 870.2 947 51.1
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 2.3e-250 869.8 1102 46.4
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 6.7e-250 868.2 1102 46.7
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 3.7e-240 835.9 1086 46.2
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 1.5e-230 803.9 837 52.9
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 6.1e-227 792.0 1109 44.1
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 6.5e-205 718.8 1110 41.5
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.0e-202 711.4 1118 41.7
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.6e-195 687.6 1113 40.5
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.5e-188 663.7 1114 39.3
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 6.1e-179 632.5 1093 39.2
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 5.2e-162 576.2 560 55.9
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 8.7e-133 479.2 691 44.6
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 9.6e-132 475.7 1103 33.2
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.8e-106 391.7 510 45.5
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 1.7e-99 368.6 708 40.1
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 1.3e-80 305.8 307 60.6
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 4.2e-79 300.8 340 53.8
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 2.0e-76 292.0 1184 28.7
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 8.0e-62 243.4 224 60.3
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 2.5e-55 221.9 152 73.7
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 9.5e-55 219.9 271 48.7
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 1.2e-44 186.4 135 73.3
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 4.4e-44 184.5 274 46.7
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 6.6e-40 170.6 107 84.1
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 4.0e-37 161.4 472 28.4
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 2.3e-32 145.6 116 75.0
Psat4g193320 Pisum sativum HOM05D003460 ORTHO05D004277 5.6e-31 141.0 100 79.0
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 1.6e-25 122.9 103 66.0
PGSC0003DMG400000171 Solanum tuberosum HOM05D003460 ORTHO05D004277 2.7e-25 122.1 134 55.2
TPR.G17917 Trifolium pratense HOM05D003460 ORTHO05D004277 5.1e-24 117.9 65 90.8
SHI13445 Sapria himalayana HOM05D003460 ORTHO05D004277 7.3e-23 114.0 142 47.9
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 9.6e-23 113.6 69 84.1
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 7.9e-17 94.0 180 36.7
Psat4g195400 Pisum sativum HOM05D000929 ORTHO05D002623 2.4e-13 82.4 63 58.7
VMungo0540G1705 Vigna mungo HOM05D003460 ORTHO05D030575 6.9e-13 80.9 96 53.1
Dinv43814 Davidia involucrata HOM05D003460 ORTHO05D013366 3.8e-11 75.1 54 72.2
Psat3g174760 Pisum sativum HOM05D000902 ORTHO05D000832 1.9e-10 72.8 47 70.2
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 2.7e-09 68.9 117 41.9
HPP92_028274 Vanilla planifolia HOM05D003460 ORTHO05D030575 2.5e-07 62.4 70 45.7
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 2.1e-06 59.3 91 40.7


User provided reference genes

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