Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 2234.9 1123 100.0
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1954.9 1138 86.9
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1830.1 1138 82.8
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1735.3 1082 81.4
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1667.9 1133 76.3
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1659.4 1140 75.4
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1650.6 1139 74.3
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1646.7 1147 74.0
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1635.9 1140 74.6
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1635.9 1141 74.4
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1631.3 1138 74.0
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1616.7 1143 72.7
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1546.9 1061 74.9
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1545.0 1162 69.4
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1530.8 1165 68.5
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1524.2 1144 69.5
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 1515.4 1160 68.6
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1506.1 1161 68.4
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1504.6 1164 68.0
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1501.9 1168 67.8
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1500.7 1165 67.5
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1500.0 1159 67.4
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1495.7 1155 68.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1382.5 1148 62.3
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1370.5 1166 61.9
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 0.0e+00 1368.6 1169 61.2
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1368.2 1166 61.6
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1364.7 1166 61.1
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1358.2 1163 61.2
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1352.0 1164 60.5
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1350.5 1166 60.7
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1348.6 1164 60.6
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1340.9 1168 60.0
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1340.5 1166 60.6
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1338.6 1166 60.7
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 0.0e+00 1338.2 1162 59.8
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1337.8 1163 60.0
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1333.5 1166 60.6
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1332.8 1166 60.1
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1330.9 1170 59.8
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1327.0 1166 60.0
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 0.0e+00 1322.0 1153 60.2
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1319.7 1169 59.5
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1316.6 1167 59.5
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1306.6 1164 59.3
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1303.9 1166 59.4
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1302.7 1165 59.7
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1302.3 1164 59.3
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1300.8 1161 59.2
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1295.8 1168 58.6
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1293.5 1163 58.7
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1293.5 1186 57.8
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1289.2 1156 59.3
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1281.5 1163 58.5
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1280.0 1166 58.7
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1280.0 1121 59.7
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1277.3 1201 57.5
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1276.9 1157 58.0
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1276.5 1157 58.0
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1275.0 1142 58.9
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1272.7 1163 58.2
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1272.7 1166 57.9
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1265.8 1164 57.8
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1259.6 1168 57.2
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1257.3 1188 58.2
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1242.6 1166 56.9
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1235.7 1165 56.2
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1229.5 1153 57.0
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1226.1 1164 57.0
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1224.2 1160 57.1
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1220.7 1171 56.1
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1219.1 1165 56.8
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1213.4 1168 55.1
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1209.9 1173 55.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1209.1 1173 55.2
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1208.7 1169 55.9
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1204.1 1164 55.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 0.0e+00 1192.6 1170 55.2
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1188.3 1117 56.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1184.1 1126 56.0
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1182.2 1169 55.2
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1167.9 1134 54.9
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 1157.9 1137 54.4
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1155.6 1153 53.9
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1151.7 1124 54.2
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1150.2 1150 54.4
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 0.0e+00 1149.8 1145 55.0
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1145.6 1137 54.6
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1134.0 1166 53.8
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1132.9 1120 55.1
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1130.9 1125 54.7
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 0.0e+00 1130.2 1143 54.1
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 0.0e+00 1129.8 1140 54.3
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 1127.9 1142 54.2
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1127.1 1163 51.8
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 0.0e+00 1126.7 1156 53.6
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 0.0e+00 1126.3 1145 53.8
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 0.0e+00 1125.5 1130 53.8
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 0.0e+00 1123.2 1145 53.5
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1121.7 1141 53.6
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1115.5 1151 53.3
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 0.0e+00 1115.5 1145 53.3
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1115.1 1147 53.2
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1113.6 1147 53.3
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1113.6 1147 53.1
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1113.6 1053 55.4
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1113.2 1147 53.3
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1112.8 1143 53.5
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1109.7 1139 53.5
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1108.2 1141 53.6
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1104.0 1169 51.1
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1102.0 1147 52.7
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1100.5 1145 53.4
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 0.0e+00 1096.3 1172 50.9
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1094.3 1142 53.2
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1091.6 1141 52.3
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1091.3 1143 52.1
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1082.0 1094 53.9
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.5e-311 1073.2 1084 54.0
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 3.5e-307 1058.5 1109 52.8
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 1.1e-305 1053.5 1120 52.6
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 2.6e-302 1042.3 1140 50.7
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 7.9e-299 1030.8 1178 49.2
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 8.1e-296 1020.8 1205 49.4
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 4.9e-293 1011.5 1202 49.2
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.2e-291 1006.9 1141 50.8
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.0e-274 950.7 1171 48.2
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.0e-257 893.3 1100 47.4
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.4e-255 886.3 864 55.0
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 2.0e-254 883.2 1153 45.6
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.5e-254 882.5 864 54.6
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.7e-243 846.3 1138 43.7
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 9.2e-231 804.7 1144 41.1
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 1.8e-218 763.8 808 53.0
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 8.9e-218 761.5 1137 41.8
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 9.2e-215 751.5 989 45.4
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.8e-200 703.0 717 52.2
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.7e-198 696.8 1210 37.4
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.2e-193 681.4 1084 40.0
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 3.8e-192 676.4 788 50.0
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.6e-185 653.7 1138 37.5
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.2e-182 644.8 1151 36.4
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 8.7e-181 638.6 1136 37.0
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 6.9e-170 602.4 1081 37.0
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.5e-169 601.3 1135 35.7
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 3.2e-159 567.0 748 43.6
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 1.2e-137 495.4 748 41.4
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 7.5e-124 449.5 347 65.1
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.6e-89 335.5 361 50.4
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 9.6e-79 299.7 726 31.5
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.8e-77 295.4 242 58.7
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 7.6e-76 290.0 379 43.8
Psat4g169200 Pisum sativum HOM05D003460 ORTHO05D004277 3.1e-69 268.1 301 51.8
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 5.1e-64 250.8 249 51.4
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 6.0e-57 227.3 128 82.0
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.3e-55 221.5 166 65.1
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 2.0e-44 185.7 128 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 3.8e-43 181.4 215 45.1
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 4.2e-42 177.9 177 53.1
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 2.2e-35 155.6 220 40.9
Haze_15504 Corylus avellana HOM05D003460 ORTHO05D004277 3.5e-28 131.7 309 34.0
TPR.G30982 Trifolium pratense HOM05D003460 ORTHO05D004277 1.9e-26 125.9 66 97.0
VMungo1127G1485 Vigna mungo HOM05D003460 ORTHO05D436009 3.3e-23 115.2 97 63.9
Actinidia25173 Actinidia chinensis HOM05D003460 ORTHO05D004277 7.7e-20 104.0 103 60.2
Zm00001eb245130 Zea mays HOM05D003460 ORTHO05D004277 2.2e-14 85.9 68 54.4
arahy.Tifrunner.gnm1.ann1.N0BX7Q Arachis hypogaea HOM05D003460 ORTHO05D087672 1.1e-10 73.6 55 61.8
Psat3g065360 Pisum sativum HOM05D003044 ORTHO05D001869 1.8e-08 66.2 42 73.8
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 6.8e-08 64.3 46 84.8
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-07 63.5 70 54.3
Zm00001eb291570 Zea mays HOM05D003460 ORTHO05D004277 9.8e-07 60.5 109 37.6


User provided reference genes

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