Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8663 Trifolium pratense HOM05D004646 ORTHO05D005829 2.6e-43 178.3 92 100.0
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 7.2e-33 143.7 76 96.1
Ca_27800_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 1.2e-32 142.9 77 94.8
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 2.1e-32 142.1 81 85.2
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 8.0e-32 140.2 76 93.4
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 1.0e-31 139.8 76 90.8
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 1.0e-31 139.8 76 90.8
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 1.4e-31 139.4 76 93.4
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 88.2
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 1.8e-31 139.0 81 84.0
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
QL03p063036 Quercus lobata HOM05D004646 ORTHO05D005829 1.8e-31 139.0 79 87.3
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 89.5
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 1.8e-31 139.0 76 90.8
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 2.3e-31 138.7 76 93.4
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 2.3e-31 138.7 76 93.4
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 2.3e-31 138.7 76 92.1
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 3.0e-31 138.3 76 88.2
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 4.0e-31 137.9 76 90.8
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 4.0e-31 137.9 76 89.5
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 5.2e-31 137.5 76 89.5
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 5.2e-31 137.5 76 90.8
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 89.5
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 89.5
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 89.5
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 89.5
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 86.8
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 6.7e-31 137.1 76 86.8
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 8.8e-31 136.7 76 88.2
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 8.8e-31 136.7 76 86.8
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 8.8e-31 136.7 76 88.2
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 1.2e-30 136.3 76 89.5
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 1.2e-30 136.3 76 89.5
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 1.2e-30 136.3 75 89.3
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 1.2e-30 136.3 76 86.8
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 1.2e-30 136.3 76 89.5
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 1.5e-30 136.0 76 86.8
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 1.5e-30 136.0 76 85.5
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 2.0e-30 135.6 76 82.9
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 2.0e-30 135.6 76 88.2
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 2.6e-30 135.2 76 86.8
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 3.3e-30 134.8 76 85.5
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 3.3e-30 134.8 76 88.2
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 4.4e-30 134.4 76 86.8
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 4.4e-30 134.4 76 85.5
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 4.4e-30 134.4 75 88.0
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 5.7e-30 134.0 76 86.8
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 5.7e-30 134.0 76 86.8
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 7.5e-30 133.7 76 85.5
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 7.5e-30 133.7 76 85.5
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 7.5e-30 133.7 76 85.5
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 7.5e-30 133.7 76 84.2
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 7.5e-30 133.7 76 85.5
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 9.7e-30 133.3 76 85.5
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 9.7e-30 133.3 76 85.5
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 9.7e-30 133.3 76 82.9
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 9.7e-30 133.3 76 85.5
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 1.3e-29 132.9 76 85.5
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.7e-29 132.5 76 81.6
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 1.7e-29 132.5 76 84.2
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 1.7e-29 132.5 76 84.2
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 1.7e-29 132.5 76 85.5
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 1.7e-29 132.5 80 78.8
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 2.2e-29 132.1 76 82.9
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 2.2e-29 132.1 76 82.9
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 2.2e-29 132.1 76 85.5
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 2.8e-29 131.7 76 82.9
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 2.8e-29 131.7 76 84.2
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 2.8e-29 131.7 76 84.2
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 2.8e-29 131.7 76 82.9
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 2.8e-29 131.7 76 82.9
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 3.7e-29 131.3 76 81.6
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 3.7e-29 131.3 76 82.9
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 3.7e-29 131.3 76 82.9
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 3.7e-29 131.3 76 80.3
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 4.8e-29 131.0 76 85.5
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 4.8e-29 131.0 76 84.2
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 6.3e-29 130.6 76 81.6
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 6.3e-29 130.6 76 82.9
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 6.3e-29 130.6 76 82.9
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 6.3e-29 130.6 76 81.6
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 6.3e-29 130.6 76 82.9
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 6.3e-29 130.6 75 82.7
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 1.1e-28 129.8 76 80.3
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 1.4e-28 129.4 80 76.2
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 1.8e-28 129.0 75 84.0
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 2.4e-28 128.6 76 80.3
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 2.4e-28 128.6 76 81.6
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 3.1e-28 128.3 76 82.9
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 4.1e-28 127.9 76 81.6
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 5.3e-28 127.5 75 84.0
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 3.5e-27 124.8 75 78.7
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 7.7e-27 123.6 76 76.3
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 7.7e-27 123.6 82 75.6
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.0e-26 123.2 76 76.3
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 6.5e-26 120.6 66 89.4
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 4.2e-25 117.9 76 71.1
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 7.2e-25 117.1 76 75.0
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 1.2e-24 116.3 75 72.0
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 1.6e-24 115.9 66 84.8
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 1.6e-24 115.9 66 86.4
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 6.1e-24 114.0 71 77.5
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 1.0e-23 113.2 76 71.1
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 1.4e-23 112.8 70 81.4
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 7.5e-22 107.1 77 64.9
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 7.5e-22 107.1 76 72.4
arahy.Tifrunner.gnm1.ann1.PSIG0Y Arachis hypogaea HOM05D004646 ORTHO05D005829 9.8e-22 106.7 74 73.0
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 2.4e-20 102.1 67 77.6
ATR0307G135 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.6e-19 99.4 73 61.6
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.6e-19 99.4 68 66.2
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.6e-19 99.4 68 66.2
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 3.5e-19 98.2 95 57.9
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 2.9e-18 95.1 74 68.9
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 3.2e-17 91.7 74 58.1
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 1.5e-14 82.8 76 50.0
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 2.0e-14 82.4 74 51.4
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 4.4e-14 81.3 76 48.7
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.3e-13 79.7 64 60.9
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 2.2e-13 79.0 72 50.0
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 2.2e-13 79.0 72 50.0
Cre06.g310050 Chlamydomonas reinhardtii HOM05D004646 ORTHO05D005829 1.1e-12 76.6 76 48.7
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 6.1e-08 60.8 31 90.3
Aa31sc1802G10 Aethionema arabicum HOM05D004646 ORTHO05D005829 1.5e-06 56.2 37 70.3
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 1.5e-06 56.2 60 48.3
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 2.6e-06 55.5 56 48.2
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 3.4e-06 55.1 56 46.4
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 3.4e-06 55.1 56 46.4
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 3.4e-06 55.1 60 50.0
Cpa.g.sc122.12 Carica papaya HOM05D003816 ORTHO05D004410 4.4e-06 54.7 60 41.7
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 4.4e-06 54.7 60 48.3
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 5.7e-06 54.3 60 48.3
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 7.5e-06 53.9 60 45.0
HPP92_002356 Vanilla planifolia HOM05D006971 ORTHO05D009076 7.5e-06 53.9 46 56.5


User provided reference genes

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