Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 8.1e-97 357.1 180 100.0
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 4.1e-32 142.1 302 35.4
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 4.1e-32 142.1 302 35.4
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 4.1e-32 142.1 302 35.4
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 5.9e-31 138.3 302 35.4
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 1.3e-30 137.1 302 35.1
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 5.0e-30 135.2 302 34.4
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 3.0e-27 125.9 302 33.1
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 1.3e-25 120.6 302 32.1
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 6.3e-25 118.2 302 31.1
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 6.3e-25 118.2 302 31.1
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 8.3e-25 117.9 68 82.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 7.0e-24 114.8 77 68.8
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 7.0e-24 114.8 77 68.8
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 3.5e-23 112.5 302 31.1
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.5e-21 107.1 77 64.9
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 7.3e-21 104.8 77 64.9
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 2.1e-20 103.2 80 60.0
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-20 103.2 77 63.6
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-20 103.2 77 63.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 2.1e-20 103.2 77 63.6
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 2.8e-20 102.8 77 63.6
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 6.1e-20 101.7 77 62.3
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 6.1e-20 101.7 77 62.3
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 6.1e-20 101.7 77 62.3
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 8.0e-20 101.3 77 62.3
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 1.8e-19 100.1 77 61.0
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 2.3e-19 99.8 77 62.3
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 2.3e-19 99.8 77 61.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 2.3e-19 99.8 77 61.0
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 2.3e-19 99.8 77 61.0
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 3.0e-19 99.4 77 61.0
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 4.0e-19 99.0 77 59.7
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 4.0e-19 99.0 71 66.2
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 4.0e-19 99.0 68 69.1
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 4.0e-19 99.0 68 67.6
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 4.0e-19 99.0 77 62.3
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 5.2e-19 98.6 68 69.1
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 5.2e-19 98.6 77 59.7
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 5.2e-19 98.6 77 62.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 6.8e-19 98.2 80 56.2
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 1.2e-18 97.4 77 61.0
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.2e-18 97.4 77 61.0
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 1.2e-18 97.4 77 62.3
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.5e-18 97.1 77 61.0
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 2.0e-18 96.7 67 68.7
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.0e-18 96.7 77 59.7
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 2.0e-18 96.7 77 61.0
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.6e-18 96.3 77 59.7
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.4e-18 95.5 77 55.8
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.4e-18 95.5 77 55.8
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 5.7e-18 95.1 80 55.0
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 7.5e-18 94.7 77 57.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 7.5e-18 94.7 77 58.4
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 9.8e-18 94.4 71 64.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.3e-17 94.0 68 63.2
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 1.3e-17 94.0 77 58.4
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.3e-17 94.0 77 57.1
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.3e-17 94.0 77 58.4
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.7e-17 93.6 79 59.5
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.9e-17 92.8 77 59.7
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.9e-17 92.8 77 59.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.9e-17 92.8 77 59.7
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.9e-17 92.8 77 57.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.7e-17 92.4 77 58.4
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 8.3e-17 91.3 77 55.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 8.3e-17 91.3 68 64.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.4e-16 90.5 77 55.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.4e-16 90.5 80 57.5
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.8e-16 90.1 77 51.9
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.1e-16 89.0 77 57.1
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 7.0e-16 88.2 66 63.6
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 7.0e-16 88.2 77 55.8
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 7.0e-16 88.2 71 62.0
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 7.0e-16 88.2 77 51.9
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.2e-16 87.8 71 62.0
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.2e-15 87.4 77 54.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.6e-15 87.0 68 58.8
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 2.0e-15 86.7 77 51.9
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 2.0e-15 86.7 77 53.2
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 3.5e-15 85.9 65 63.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.0e-14 84.3 77 53.2
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 1.0e-14 84.3 77 55.8
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.0e-14 84.3 77 50.6
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.7e-14 83.6 77 53.2
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.0e-14 82.8 77 50.6
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 6.6e-14 81.6 77 54.5
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.9e-13 80.1 76 50.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.5e-13 77.8 59 64.4
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 9.5e-13 77.8 65 60.0
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 6.2e-12 75.1 66 65.2
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.4e-11 73.9 68 50.0
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 3.1e-11 72.8 76 47.4
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 5.2e-11 72.0 65 52.3
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.5e-10 70.5 62 53.2
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.0e-10 70.1 65 56.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.0e-10 70.1 70 48.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.6e-10 69.7 70 48.6
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 9.8e-10 67.8 69 52.2
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.7e-09 67.0 66 54.5
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 2.2e-09 66.6 65 53.8
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.4e-08 63.9 57 56.1
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 9.2e-08 61.2 82 36.6
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.7e-07 59.7 57 54.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.0e-06 56.2 60 50.0


User provided reference genes

Program Settings