Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 5.3e-198 694.1 344 100.0
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.4e-174 616.3 344 89.5
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 4.0e-169 598.2 344 87.8
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 1.9e-163 579.3 344 84.3
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 1.2e-152 543.5 345 79.4
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 1.0e-148 530.4 334 79.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 5.1e-148 528.1 341 77.4
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 1.5e-147 526.6 332 78.6
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 3.6e-146 521.9 337 77.7
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 6.4e-135 484.6 342 71.6
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.3e-127 460.3 319 71.5
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.1e-122 443.0 356 63.8
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 2.2e-119 433.0 351 65.2
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 2.5e-118 429.5 325 67.4
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 4.2e-118 428.7 311 67.8
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 5.5e-118 428.3 254 81.5
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.5e-115 420.2 303 66.3
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 1.5e-115 420.2 310 67.7
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 7.4e-115 417.9 316 65.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.6e-114 416.8 343 61.8
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 2.2e-114 416.4 322 65.8
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 3.7e-114 415.6 244 79.9
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 8.2e-114 414.5 314 65.0
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.1e-113 414.1 349 61.0
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.1e-113 414.1 349 61.6
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 1.1e-113 414.1 311 66.2
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 1.1e-113 414.1 351 62.7
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 1.4e-113 413.7 288 68.8
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.4e-113 413.7 353 60.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 4.1e-113 412.1 358 60.3
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.3e-113 411.8 308 65.9
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 9.0e-113 411.0 349 62.2
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.2e-112 410.6 310 66.5
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 2.0e-112 409.8 314 66.2
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 5.9e-112 408.3 285 70.5
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 2.9e-111 406.0 349 60.7
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.9e-111 406.0 344 62.2
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 2.9e-111 406.0 347 59.7
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 1.4e-110 403.7 282 69.5
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 1.9e-110 403.3 314 63.4
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 3.2e-110 402.5 308 65.3
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.0e-108 397.5 308 63.3
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 1.8e-108 396.7 299 66.2
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 3.9e-108 395.6 350 61.7
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 8.8e-108 394.4 312 62.8
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.1e-107 394.0 313 61.7
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.1e-107 394.0 351 58.7
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 2.0e-107 393.3 285 64.9
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.5e-107 392.9 363 59.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 4.3e-107 392.1 346 61.3
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 7.4e-107 391.3 280 66.8
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 7.4e-107 391.3 297 65.7
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 7.4e-107 391.3 340 60.3
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.7e-106 390.2 312 62.2
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 2.2e-106 389.8 323 62.2
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 3.7e-106 389.0 350 60.0
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 8.2e-106 387.9 298 66.1
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.4e-105 386.3 347 58.8
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 3.1e-105 386.0 358 57.0
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 4.1e-105 385.6 282 63.5
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 9.1e-105 384.4 290 64.8
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 1.2e-104 384.0 358 56.7
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.2e-104 384.0 286 65.0
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.2e-104 384.0 288 65.3
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 2.0e-104 383.3 353 57.8
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 5.9e-104 381.7 320 60.6
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 5.9e-104 381.7 352 58.2
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.0e-103 380.9 290 63.4
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.0e-103 380.9 357 57.7
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.0e-103 380.9 357 57.7
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 5.0e-103 378.6 343 57.1
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 6.5e-103 378.3 311 58.8
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.9e-102 376.7 312 61.9
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 3.2e-102 375.9 327 58.4
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.2e-102 375.6 325 59.7
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 2.1e-101 373.2 294 61.2
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 4.7e-101 372.1 346 57.2
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.8e-100 370.2 318 60.7
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 2.3e-100 369.8 324 58.3
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 2.3e-100 369.8 318 59.7
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 2.3e-100 369.8 320 60.0
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 2.3e-100 369.8 320 60.0
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 2.3e-100 369.8 344 57.0
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.9e-100 369.0 325 59.1
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 8.8e-100 367.9 293 62.8
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 4.4e-99 365.5 343 57.1
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 9.7e-99 364.4 245 72.2
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.7e-98 363.6 256 67.2
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 5.3e-97 358.6 260 67.3
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 7.0e-97 358.2 316 59.8
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 2.0e-96 356.7 317 59.3
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 2.0e-96 356.7 264 66.3
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.5e-94 350.5 281 61.6
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 2.5e-94 349.7 326 56.7
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 9.4e-94 347.8 334 53.9
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 3.0e-92 342.8 293 58.7
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.1e-91 340.9 305 56.7
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 6.3e-90 335.1 342 54.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 2.4e-89 333.2 255 64.7
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 2.9e-87 326.2 239 64.9
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 2.9e-87 326.2 284 57.0
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 5.5e-86 322.0 254 60.6
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 2.7e-85 319.7 221 71.0
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 4.0e-84 315.8 226 67.7
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 9.8e-83 311.2 401 45.6
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 1.7e-82 310.5 311 54.7
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.4e-81 307.4 223 65.5
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.0e-72 276.9 200 68.0
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 2.2e-66 256.9 288 45.5
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 2.3e-63 246.9 177 66.1
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 1.6e-61 240.7 308 47.4
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 2.1e-61 240.4 281 42.3
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 1.6e-56 224.2 354 37.3
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.0e-55 221.5 329 41.0
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 3.6e-53 213.0 321 38.6
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.4e-52 211.1 245 46.5
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 5.2e-52 209.1 193 56.5
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.7e-50 203.0 293 39.2
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 4.1e-49 199.5 255 44.7
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 3.9e-47 193.0 154 59.1
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 7.3e-46 188.7 268 41.8
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 4.7e-45 186.0 255 41.2
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 7.6e-43 178.7 392 32.7
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-42 177.6 178 52.2
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.9e-41 174.1 131 61.1
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 3.9e-39 166.4 236 40.3
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 5.2e-36 156.0 92 72.8
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-34 151.4 162 53.1
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 6.0e-32 142.5 125 58.4
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 5.1e-31 139.4 120 53.3
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 5.6e-30 136.0 368 28.3
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 3.1e-28 130.2 120 54.2
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 5.3e-20 102.8 309 27.8
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 7.9e-16 89.0 236 30.5
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 7.1e-09 65.9 222 25.7
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 9.3e-09 65.5 78 46.2


User provided reference genes

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