Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G862 Trifolium pratense HOM05D004761 ORTHO05D005813 2.8e-70 268.5 134 100.0
Medtr1g110750 Medicago truncatula HOM05D004761 ORTHO05D005813 1.9e-50 202.6 110 91.8
Psat6g225000 Pisum sativum HOM05D004761 ORTHO05D005813 3.6e-49 198.4 110 89.1
Gohir.A03G147200 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.4e-47 191.8 113 82.3
Gohir.D02G170400 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.4e-47 191.8 113 82.3
Gorai.005G191400 Gossypium raimondii HOM05D004761 ORTHO05D005813 3.4e-47 191.8 113 82.3
Eucgr.G02317 Eucalyptus grandis HOM05D004761 ORTHO05D005813 5.7e-47 191.0 113 83.2
TWI79G0635 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 7.5e-47 190.7 113 81.4
Manes.14G102900 Manihot esculenta HOM05D004761 ORTHO05D005813 1.3e-46 189.9 132 74.2
Aa31LG2G6400 Aethionema arabicum HOM05D004761 ORTHO05D005813 2.2e-46 189.1 113 82.3
ClCG05G022660 Citrullus lanatus HOM05D004761 ORTHO05D005813 2.2e-46 189.1 113 82.3
Thecc.02G229900 Theobroma cacao HOM05D004761 ORTHO05D005813 2.2e-46 189.1 110 82.7
Gohir.D11G344800 Gossypium hirsutum HOM05D004761 ORTHO05D005813 2.8e-46 188.7 113 80.5
Gorai.007G375200 Gossypium raimondii HOM05D004761 ORTHO05D005813 2.8e-46 188.7 113 80.5
arahy.Tifrunner.gnm1.ann1.8WFG9Z Arachis hypogaea HOM05D004761 ORTHO05D005813 4.9e-46 188.0 110 84.5
arahy.Tifrunner.gnm1.ann1.QJ0JEK Arachis hypogaea HOM05D004761 ORTHO05D005813 4.9e-46 188.0 110 84.5
Cpa.g.sc1.34 Carica papaya HOM05D004761 ORTHO05D005813 4.9e-46 188.0 113 80.5
Cfa018591 Carpinus fangiana HOM05D004761 ORTHO05D005813 4.9e-46 188.0 113 83.2
Phvul.007G027600 Phaseolus vulgaris HOM05D004761 ORTHO05D005813 4.9e-46 188.0 110 84.5
CsaV3_5G034380 Cucumis sativus L. HOM05D004761 ORTHO05D005813 6.3e-46 187.6 113 81.4
CiPaw.16G065200 Carya illinoinensis HOM05D004761 ORTHO05D005813 8.3e-46 187.2 113 81.4
Glyma.20G116100 Glycine max HOM05D004761 ORTHO05D005813 8.3e-46 187.2 110 83.6
Hma1.2p1_0061F.1_g033840 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 8.3e-46 187.2 113 81.4
PGR119G1215 Punica granatum HOM05D004761 ORTHO05D005813 8.3e-46 187.2 113 81.4
THA.LOC104825698 Tarenaya hassleriana HOM05D004761 ORTHO05D005813 8.3e-46 187.2 113 80.5
VMungo0720G0616 Vigna mungo HOM05D004761 ORTHO05D005813 8.3e-46 187.2 110 83.6
arahy.Tifrunner.gnm1.ann1.BGN30W Arachis hypogaea HOM05D004761 ORTHO05D005813 1.1e-45 186.8 110 83.6
Sed0020611 Sechium edule HOM05D004761 ORTHO05D005813 1.1e-45 186.8 113 81.4
Peaxi162Scf00382g00825 Petunia axillaris HOM05D004761 ORTHO05D005813 1.4e-45 186.4 113 80.5
Ah.03g137610 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.8e-45 186.0 110 82.7
Duzib248G0790 Durio zibethinus HOM05D004761 ORTHO05D005813 1.8e-45 186.0 113 78.8
Sabra08G0091800 Salix brachista HOM05D004761 ORTHO05D005813 1.8e-45 186.0 113 81.4
BcaB07g30626 Brassica carinata HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 83.2
A09p25090 Brassica napus HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 83.2
C09p32130 Brassica napus HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 83.2
BraA09t38096Z Brassica rapa HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 83.2
Potri.008G121100 Populus trichocarpa HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 81.4
Sopen05g005170 Solanum pennellii HOM05D004761 ORTHO05D005813 2.4e-45 185.7 113 80.5
PGSC0003DMG400014544 Solanum tuberosum HOM05D004761 ORTHO05D005813 3.1e-45 185.3 133 72.2
TWI31G0637 Tripterygium wilfordii HOM05D004761 ORTHO05D005813 3.1e-45 185.3 113 78.8
CDE05G1514 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 4.1e-45 184.9 113 79.6
Cc11_g10100 Coffea canephora HOM05D004761 ORTHO05D005813 4.1e-45 184.9 113 79.6
Lj5g0002032 Lotus japonicus HOM05D004761 ORTHO05D005813 4.1e-45 184.9 110 82.7
BcaC06g31103 Brassica carinata HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
A06p42360 Brassica napus HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
C07p34980 Brassica napus HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
BolC7t44030H Brassica oleracea HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
BraA06t27151Z Brassica rapa HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
CARHR146910 Cardamine hirsuta HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 80.5
Thhalv10004759m.g Eutrema salsugineum HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 82.3
GSVIVG01011891001 Vitis vinifera HOM05D004761 ORTHO05D005813 5.4e-45 184.5 113 79.6
CDE05G0568 Ceratophyllum demersum HOM05D004761 ORTHO05D005813 9.1e-45 183.7 113 78.8
Ah.02g127920 Amaranthus hybridus HOM05D004761 ORTHO05D005813 1.2e-44 183.3 133 69.9
BcaC04g21408 Brassica carinata HOM05D004761 ORTHO05D005813 1.2e-44 183.3 113 81.4
BolC9t56063H Brassica oleracea HOM05D004761 ORTHO05D005813 1.2e-44 183.3 113 81.4
Ciclev10016274m.g Citrus clementina HOM05D004761 ORTHO05D005813 1.2e-44 183.3 110 81.8
Lsat_1_v5_gn_3_59080 Lactuca sativa HOM05D004761 ORTHO05D005813 1.2e-44 183.3 113 80.5
Sp2g15160 Schrenkiella parvula HOM05D004761 ORTHO05D005813 1.2e-44 183.3 113 81.4
TAR629G2706 Trochodendron aralioides HOM05D004761 ORTHO05D005813 1.2e-44 183.3 113 80.5
AL5G14580 Arabidopsis lyrata HOM05D004761 ORTHO05D005813 2.0e-44 182.6 110 82.7
CSS0041255 Camellia sinensis var. sinensis HOM05D004761 ORTHO05D005813 2.0e-44 182.6 113 78.8
AUR62002860 Chenopodium quinoa HOM05D004761 ORTHO05D005813 2.0e-44 182.6 110 80.9
Oeu003182.1 Olea europaea HOM05D004761 ORTHO05D005813 2.0e-44 182.6 113 78.8
RcHm_v2.0_Chr4g0435111 Rosa chinensis HOM05D004761 ORTHO05D005813 2.0e-44 182.6 113 79.6
AT3G25920 Arabidopsis thaliana HOM05D004761 ORTHO05D005813 3.5e-44 181.8 110 81.8
HanXRQChr15g0476311 Helianthus annuus HOM05D004761 ORTHO05D005813 3.5e-44 181.8 113 79.6
Prupe.1G311800 Prunus persica HOM05D004761 ORTHO05D005813 3.5e-44 181.8 113 78.8
arahy.Tifrunner.gnm1.ann1.B0KB7I Arachis hypogaea HOM05D004761 ORTHO05D005813 5.9e-44 181.0 104 86.5
Carub.0005s0378 Capsella rubella HOM05D004761 ORTHO05D005813 5.9e-44 181.0 110 81.8
AUR62035212 Chenopodium quinoa HOM05D004761 ORTHO05D005813 5.9e-44 181.0 110 80.0
Nitab4.5_0000791g0110 Nicotiana tabacum HOM05D004761 ORTHO05D005813 5.9e-44 181.0 113 78.8
Nitab4.5_0003373g0010 Nicotiana tabacum HOM05D004761 ORTHO05D005813 5.9e-44 181.0 113 78.8
CAN.G610.79 Capsicum annuum HOM05D004761 ORTHO05D005813 7.7e-44 180.6 113 77.9
Dinv21082 Davidia involucrata HOM05D004761 ORTHO05D005813 7.7e-44 180.6 113 78.8
CANSAT01G0623 Cannabis sativa HOM05D004761 ORTHO05D005813 1.0e-43 180.3 133 69.2
ECA246G4195 Erigeron canadensis HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 79.6
FvH4_4g27310 Fragaria vesca HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 77.9
FAN07G1541 Fragaria x ananassa HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 77.9
FAN12G1206 Fragaria x ananassa HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 77.9
FAN12G1874 Fragaria x ananassa HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 77.9
FAN22G1660 Fragaria x ananassa HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 77.9
MD13G1041400 Malus domestica HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 79.6
MD16G1042300 Malus domestica HOM05D004761 ORTHO05D005813 1.0e-43 180.3 113 79.6
Migut.E00345 Erythranthe guttata HOM05D004761 ORTHO05D005813 1.3e-43 179.9 113 79.6
Sc11g0003470 Simmondsia chinensis HOM05D004761 ORTHO05D005813 1.7e-43 179.5 110 80.9
Haze_17489 Corylus avellana HOM05D004761 ORTHO05D005813 2.3e-43 179.1 119 75.6
Zm00001eb008910 Zea mays HOM05D004761 ORTHO05D005813 2.3e-43 179.1 113 77.0
MSTRG.843 Avicennia marina HOM05D004761 ORTHO05D005813 2.9e-43 178.7 113 77.0
EL10Ac6g14394 Beta vulgaris HOM05D004761 ORTHO05D005813 2.9e-43 178.7 110 80.0
Lalb_Chr21g0308901 Lupinus albus HOM05D004761 ORTHO05D005813 5.0e-43 177.9 110 80.9
ATR0171G026 Amborella trichopoda HOM05D004761 ORTHO05D005813 6.6e-43 177.6 110 79.1
BcaC06g33937 Brassica carinata HOM05D004761 ORTHO05D005813 6.6e-43 177.6 105 85.7
Os03g0219900 Oryza sativa ssp. japonica HOM05D004761 ORTHO05D005813 6.6e-43 177.6 113 75.2
HPP92_009433 Vanilla planifolia HOM05D004761 ORTHO05D005813 8.6e-43 177.2 108 80.6
SEGI_01542 Sequoiadendron giganteum HOM05D004761 ORTHO05D005813 1.1e-42 176.8 110 79.1
PSO717G0038 Papaver somniferum HOM05D004761 ORTHO05D005813 1.9e-42 176.0 107 80.4
Aqoxy3G00293 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 2.5e-42 175.6 107 81.3
PSO675G3483 Papaver somniferum HOM05D004761 ORTHO05D005813 2.5e-42 175.6 107 80.4
Pp3c23_7670 Physcomitrium patens HOM05D004761 ORTHO05D005813 2.5e-42 175.6 110 82.7
Hund25060 Selenicereus undatus HOM05D004761 ORTHO05D005813 2.5e-42 175.6 110 80.0
SGA_v2.0_scaffold170G38770 Striga asiatica HOM05D004761 ORTHO05D005813 3.3e-42 175.3 113 77.9
DCAR_023656 Daucus carota HOM05D004761 ORTHO05D005813 5.6e-42 174.5 133 69.2
Lalb_Chr02g0145941 Lupinus albus HOM05D004761 ORTHO05D005813 5.6e-42 174.5 110 79.1
Lj3C1014G6 Lonicera japonica HOM05D004761 ORTHO05D005813 7.2e-42 174.1 124 70.2
Pp3c8_18220 Physcomitrium patens HOM05D004761 ORTHO05D005813 1.2e-41 173.3 110 80.9
Pp3c20_9200 Physcomitrium patens HOM05D004761 ORTHO05D005813 2.1e-41 172.6 110 81.8
Pp3c24_11450 Physcomitrium patens HOM05D004761 ORTHO05D005813 6.1e-41 171.0 110 80.0
vmacro10560 Vaccinium macrocarpon HOM05D004761 ORTHO05D005813 6.1e-41 171.0 113 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2844 Anthoceros agrestis HOM05D004761 ORTHO05D005813 8.0e-41 170.6 113 76.1
Ca_11170_v3 Cicer arietinum L. HOM05D004761 ORTHO05D005813 8.0e-41 170.6 92 90.2
Mapoly0065s0007 Marchantia polymorpha HOM05D004761 ORTHO05D005813 8.0e-41 170.6 110 79.1
Rhsim09G0107700 Rhododendron simsii HOM05D004761 ORTHO05D005813 1.4e-40 169.9 113 76.1
SMO203G0084 Selaginella moellendorffii HOM05D004761 ORTHO05D005813 7.5e-39 164.1 108 75.9
MBI19_g21031_MAGBIO Magnolia biondii HOM05D004761 ORTHO05D005813 9.8e-39 163.7 130 64.6
CBR_g6324 Chara braunii HOM05D004761 ORTHO05D005813 2.9e-38 162.2 113 71.7
MELO3C012254.2 Cucumis melo HOM05D004761 ORTHO05D005813 2.4e-37 159.1 173 53.2
Solyc05g009370.4 Solanum lycopersicum HOM05D004761 ORTHO05D005813 1.2e-36 156.8 95 78.9
HPP92_009407 Vanilla planifolia HOM05D004761 ORTHO05D005813 9.5e-34 147.1 104 70.2
QL01p042268 Quercus lobata HOM05D004761 ORTHO05D005813 6.2e-33 144.4 210 43.8
Potri.010G124301 Populus trichocarpa HOM05D004761 ORTHO05D005813 1.0e-32 143.7 142 57.0
PRCOL_00000889 Prasinoderma coloniale HOM05D004761 ORTHO05D005813 6.4e-30 134.4 109 62.4
Actinidia16656 Actinidia chinensis HOM05D004761 ORTHO05D005813 3.2e-29 132.1 113 62.8
Cre14.g612450 Chlamydomonas reinhardtii HOM05D004761 ORTHO05D005813 4.1e-29 131.7 107 65.4
Gohir.A11G325900 Gossypium hirsutum HOM05D004761 ORTHO05D005813 1.5e-23 113.2 75 72.0
TPR.G18808 Trifolium pratense HOM05D004761 ORTHO05D000002 2.0e-23 112.8 65 84.6
MCO09G351 Micromonas commoda HOM05D004761 ORTHO05D005813 2.4e-21 105.9 96 58.3
HanXRQChr17g0552301 Helianthus annuus HOM05D004761 ORTHO05D005813 1.0e-19 100.5 55 87.3
Nn4g24161 Nelumbo nucifera HOM05D004761 ORTHO05D005813 1.3e-19 100.1 53 90.6
unitig_24.g30582 Utricularia gibba HOM05D004761 ORTHO05D005813 1.1e-18 97.1 53 86.8
COL.COLO4_29942 Corchorus olitorius HOM05D004761 ORTHO05D005813 1.5e-18 96.7 53 88.7
Sc11g0004060 Simmondsia chinensis HOM05D004761 ORTHO05D005813 1.6e-17 93.2 66 72.7
COL.COLO4_29943 Corchorus olitorius HOM05D004761 ORTHO05D005813 2.1e-17 92.8 59 74.6
Hma1.2p1_0798F.1_g219870 Hydrangea macrophylla HOM05D004761 ORTHO05D005813 3.1e-16 89.0 53 84.9
Aqoxy5G02814 Aquilegia oxysepala HOM05D004761 ORTHO05D005813 3.7e-14 82.0 44 88.6
arahy.Tifrunner.gnm1.ann1.V6GCEW Arachis hypogaea HOM05D004761 ORTHO05D005813 3.7e-14 82.0 56 71.4
Sabra10G0094300 Salix brachista HOM05D004761 ORTHO05D005813 4.9e-14 81.6 92 50.0
Nn3g17852 Nelumbo nucifera HOM05D004761 ORTHO05D005813 1.9e-13 79.7 49 75.5
unitig_22.g5574 Utricularia gibba HOM05D004761 ORTHO05D005813 1.9e-13 79.7 100 51.0
Atru.chr2.2517 Acer truncatum HOM05D004761 ORTHO05D005813 3.3e-10 68.9 38 81.6
Nn2g14253 Nelumbo nucifera HOM05D004761 ORTHO05D005813 4.3e-10 68.6 43 74.4
Gohir.D02G170233 Gossypium hirsutum HOM05D004761 ORTHO05D005813 3.1e-08 62.4 55 56.4
Haze_26805 Corylus avellana HOM05D005288 ORTHO05D006574 1.2e-07 60.5 47 68.1
Nn4g23851 Nelumbo nucifera HOM05D004761 ORTHO05D005813 2.6e-07 59.3 47 61.7
Gorai.005G190700 Gossypium raimondii HOM05D004761 ORTHO05D005813 3.4e-07 58.9 35 74.3
Gohir.D02G170133 Gossypium hirsutum HOM05D004761 ORTHO05D005813 9.9e-07 57.4 35 71.4
Sabra16G0006900 Salix brachista HOM05D005288 ORTHO05D006574 1.3e-06 57.0 114 38.6
Glyma.08G162600 Glycine max HOM05D005288 ORTHO05D006574 1.7e-06 56.6 113 36.3
Glyma.15G264500 Glycine max HOM05D005288 ORTHO05D006574 1.7e-06 56.6 113 36.3
Ca_06746_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 2.2e-06 56.2 113 35.4
Phvul.005G016800 Phaseolus vulgaris HOM05D005288 ORTHO05D006574 2.9e-06 55.8 113 36.3
Ca_24797_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
Medtr1g031890 Medicago truncatula HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
Medtr1g085490 Medicago truncatula HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
Medtr4g118060 Medicago truncatula HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
Psat6g157720 Pisum sativum HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
VMungo0464G1657 Vigna mungo HOM05D005288 ORTHO05D006574 3.8e-06 55.5 113 35.4
Dinv09930 Davidia involucrata HOM05D005288 ORTHO05D006574 4.9e-06 55.1 114 36.8
ATR0681G389 Amborella trichopoda HOM05D005288 ORTHO05D006574 6.4e-06 54.7 118 38.1
Lj1g0011811 Lotus japonicus HOM05D005288 ORTHO05D006574 6.4e-06 54.7 113 33.6
Potri.016G002400 Populus trichocarpa HOM05D005288 ORTHO05D006574 8.4e-06 54.3 114 37.7


User provided reference genes

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