Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 2.5e-195 685.3 347 100.0
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 2.4e-174 615.5 344 90.4
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.4e-169 599.7 347 87.6
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 9.9e-168 593.6 347 87.9
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 3.2e-158 562.0 347 84.4
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 3.9e-156 555.1 347 81.3
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 4.3e-155 551.6 347 81.3
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 9.6e-155 550.4 347 80.4
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 9.0e-153 543.9 347 79.3
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.7e-149 532.3 347 78.7
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.8e-148 529.6 352 76.7
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 5.1e-148 528.1 352 76.4
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 5.1e-148 528.1 347 78.4
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 2.0e-144 516.2 341 77.1
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 4.2e-134 481.9 347 64.6
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 7.2e-134 481.1 347 66.6
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 1.6e-133 479.9 358 63.1
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 1.6e-133 479.9 344 66.6
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 3.6e-133 478.8 346 66.2
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 7.9e-133 477.6 341 66.6
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 7.9e-133 477.6 347 66.6
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 7.9e-133 477.6 347 66.6
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 2.3e-132 476.1 344 64.8
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 5.1e-132 474.9 341 66.0
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 8.8e-132 474.2 347 66.3
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.1e-131 473.8 347 63.7
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 1.3e-130 470.3 346 64.2
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 4.8e-130 468.4 345 62.3
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 7.0e-129 464.5 346 63.6
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 7.0e-129 464.5 345 62.3
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 9.1e-129 464.2 346 62.4
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 1.2e-128 463.8 346 61.6
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 1.2e-128 463.8 346 67.6
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 2.0e-128 463.0 356 61.8
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.6e-128 462.6 345 63.5
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 2.6e-128 462.6 345 62.9
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 2.6e-128 462.6 349 61.9
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 4.5e-128 461.8 343 62.7
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 2.5e-126 456.1 346 61.8
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.2e-126 455.7 344 63.4
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 2.7e-125 452.6 345 61.7
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 3.6e-125 452.2 342 64.9
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 6.1e-125 451.4 395 54.7
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 1.8e-124 449.9 346 61.0
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 3.0e-124 449.1 346 68.2
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 2.0e-123 446.4 346 59.5
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 2.0e-123 446.4 343 61.5
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 2.6e-123 446.0 347 66.0
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 3.3e-123 445.7 348 58.6
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 7.4e-123 444.5 315 71.4
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 1.7e-122 443.4 348 63.8
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 1.4e-121 440.3 348 57.8
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 2.4e-121 439.5 342 59.4
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.2e-120 437.2 349 65.0
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 2.6e-120 436.0 348 64.4
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 1.3e-119 433.7 346 59.0
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 2.2e-119 433.0 344 59.6
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.9e-119 432.6 348 62.4
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 3.8e-119 432.2 345 65.5
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 3.8e-119 432.2 343 62.4
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.5e-119 431.4 345 61.4
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 1.5e-118 430.3 343 59.8
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 4.2e-118 428.7 346 60.4
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 7.2e-118 427.9 345 65.5
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 1.6e-117 426.8 346 60.1
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 8.0e-117 424.5 351 64.7
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 4.0e-116 422.2 346 63.6
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 8.8e-116 421.0 348 58.6
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.2e-115 420.6 340 59.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 2.6e-115 419.5 346 63.9
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 9.7e-115 417.5 343 63.3
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 2.8e-114 416.0 346 56.6
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 4.8e-114 415.2 346 57.2
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 4.8e-114 415.2 347 64.3
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.4e-113 413.7 349 59.6
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 1.8e-113 413.3 343 57.1
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.8e-113 413.3 337 59.3
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 1.2e-112 410.6 345 58.3
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 1.2e-112 410.6 355 57.5
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 1.2e-112 410.6 343 57.1
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 2.0e-112 409.8 348 56.6
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.7e-111 406.8 345 62.3
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 1.1e-110 404.1 341 62.2
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 8.0e-109 397.9 341 61.6
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 8.0e-109 397.9 341 61.6
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 8.0e-109 397.9 341 61.6
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 6.8e-108 394.8 346 55.8
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.0e-107 393.3 341 61.3
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 6.3e-106 388.3 325 62.8
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 1.7e-103 380.2 349 59.0
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.7e-103 380.2 349 59.6
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 1.1e-102 377.5 346 53.2
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 9.5e-102 374.4 225 86.7
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 4.7e-101 372.1 346 59.2
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 5.2e-100 368.6 344 53.5
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 8.9e-100 367.9 348 51.4
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 4.3e-94 349.0 220 82.3
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 4.3e-94 349.0 345 50.1
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 2.0e-91 340.1 349 54.2
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 6.4e-90 335.1 211 82.9
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 6.4e-90 335.1 211 82.9
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 3.3e-86 322.8 239 61.5
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 5.6e-86 322.0 275 63.3
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 5.8e-83 312.0 341 47.5
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 1.6e-80 303.9 346 45.4
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 3.5e-80 302.8 222 60.8
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 3.9e-79 299.3 218 61.0
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 1.1e-76 291.2 218 61.0
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 4.4e-75 285.8 209 62.2
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 3.2e-73 279.6 344 43.6
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 1.7e-71 273.9 383 37.6
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.0e-71 273.1 222 64.4
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 3.9e-71 272.7 226 57.1
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 8.6e-71 271.6 223 58.7
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 4.7e-69 265.8 185 63.8
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 2.0e-67 260.4 221 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 4.6e-64 249.2 375 37.3
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 5.1e-55 219.2 221 54.3
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 8.7e-55 218.4 315 38.1
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 5.6e-54 215.7 189 58.2
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 7.3e-54 215.3 195 51.8
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 1.4e-52 211.1 182 65.9
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.4e-52 210.3 189 57.1
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 3.2e-49 199.9 201 48.8
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 4.8e-45 186.0 87 97.7
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 1.5e-43 181.0 512 27.3
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 2.2e-34 150.6 254 40.9
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 1.0e-31 141.7 100 63.0
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 3.3e-30 136.7 435 27.8
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 3.4e-27 126.7 139 48.9
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 5.0e-26 122.9 95 65.3
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 2.7e-24 117.1 103 58.3
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 8.8e-23 112.1 85 61.2
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 1.4e-15 88.2 96 50.0
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 3.0e-15 87.0 99 47.5
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 5.1e-15 86.3 64 54.7


User provided reference genes

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