Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G860 Trifolium pratense HOM05D003115 ORTHO05D003595 2.2e-48 195.3 97 100.0
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 3.4e-41 171.4 91 95.6
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.4e-41 171.4 92 92.4
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 7.6e-41 170.2 91 91.2
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 4.9e-40 167.5 91 91.2
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 3.2e-39 164.9 91 89.0
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 3.5e-38 161.4 91 86.8
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 6.6e-37 157.1 91 84.6
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.5e-36 156.0 91 83.5
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 7.3e-36 153.7 94 84.0
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 8.4e-32 140.2 91 75.8
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 1.4e-31 139.4 91 75.8
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.9e-31 139.0 91 75.8
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 4.2e-31 137.9 91 73.6
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 5.4e-31 137.5 91 74.7
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 7.1e-31 137.1 91 75.8
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.2e-30 136.3 90 73.3
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 1.6e-30 136.0 90 71.1
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 2.1e-30 135.6 91 72.5
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 2.1e-30 135.6 91 72.5
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.7e-30 135.2 91 72.5
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.5e-30 134.8 91 73.6
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 3.5e-30 134.8 91 73.6
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 3.5e-30 134.8 91 73.6
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 6.0e-30 134.0 90 72.2
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 6.0e-30 134.0 90 72.2
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 6.0e-30 134.0 91 73.6
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 1.3e-29 132.9 91 67.0
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 2.3e-29 132.1 91 69.2
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 2.3e-29 132.1 91 70.3
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 3.0e-29 131.7 91 69.2
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.0e-29 131.7 91 64.8
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 3.0e-29 131.7 91 70.3
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 5.1e-29 131.0 91 70.3
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 8.7e-29 130.2 91 71.4
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 1.9e-28 129.0 91 65.9
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.9e-28 129.0 91 68.1
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 1.9e-28 129.0 91 68.1
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.5e-28 128.6 91 65.9
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 5.6e-28 127.5 91 64.8
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 5.6e-28 127.5 91 68.1
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 9.6e-28 126.7 91 63.7
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 9.6e-28 126.7 91 67.0
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 1.3e-27 126.3 91 65.9
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 1.3e-27 126.3 91 70.3
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 1.6e-27 125.9 91 65.9
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 1.6e-27 125.9 91 65.9
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.8e-27 125.2 93 67.7
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 2.8e-27 125.2 93 67.7
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 3.7e-27 124.8 91 61.5
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.7e-27 124.8 93 67.7
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.7e-27 124.8 93 67.7
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 4.8e-27 124.4 86 66.3
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 4.8e-27 124.4 91 65.9
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 4.8e-27 124.4 91 64.8
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 4.8e-27 124.4 91 64.8
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 8.1e-27 123.6 91 63.7
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 1.1e-26 123.2 91 68.1
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 2.4e-26 122.1 91 64.8
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 2.4e-26 122.1 91 63.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.4e-26 122.1 93 66.7
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 3.1e-26 121.7 93 65.6
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.1e-26 121.7 93 65.6
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.3e-26 120.9 92 64.1
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 5.3e-26 120.9 93 65.6
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 5.3e-26 120.9 91 63.7
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 6.9e-26 120.6 89 65.2
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.2e-25 119.8 96 61.5
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 2.6e-25 118.6 96 60.4
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 7.6e-25 117.1 91 61.5
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 7.6e-25 117.1 91 56.0
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 2.9e-24 115.2 90 58.9
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 4.9e-24 114.4 91 57.1
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.4e-23 112.8 90 56.7
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.4e-23 112.8 91 57.1
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 2.4e-23 112.1 92 60.9
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 9.3e-23 110.2 93 54.8
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 2.7e-22 108.6 85 58.8
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.6e-22 107.8 91 53.8
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.0e-22 107.5 91 56.0
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.0e-21 106.7 83 61.4
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 1.3e-21 106.3 93 54.8
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.8e-21 105.9 70 72.9
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 3.9e-21 104.8 92 53.3
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 6.7e-21 104.0 92 53.3
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 2.5e-20 102.1 91 52.7
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 3.3e-20 101.7 91 53.8
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 4.3e-20 101.3 92 51.1
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 5.6e-20 100.9 93 52.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 5.6e-20 100.9 93 52.7
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 5.6e-20 100.9 93 52.7
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 5.6e-20 100.9 93 52.7
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 9.6e-20 100.1 91 49.5
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.3e-19 99.8 91 52.7
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 1.6e-19 99.4 93 51.6
AL3G41550 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 8.2e-19 97.1 81 55.6
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 8.2e-19 97.1 88 52.3
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 1.4e-18 96.3 63 74.6
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 5.3e-18 94.4 91 56.0
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.5e-17 92.8 55 81.8
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.0e-16 90.1 91 49.5
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.0e-16 90.1 91 49.5
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.9e-15 85.9 91 49.5
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 1.3e-13 79.7 91 41.8
Hma1.2p1_0039F.1_g024570 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.9e-12 75.9 48 77.1
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 5.7e-12 74.3 83 43.4
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 1.1e-10 70.1 54 66.7
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 1.4e-10 69.7 91 40.7
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 1.4e-10 69.7 91 40.7
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 5.3e-10 67.8 61 54.1
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 3.4e-09 65.1 57 54.4
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 1.3e-08 63.2 95 40.0
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 1.3e-08 63.2 91 41.8
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 2.9e-08 62.0 91 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 4.6e-06 54.7 77 37.7
Psat4g000280 Pisum sativum HOM05D003115 ORTHO05D003595 4.6e-06 54.7 35 74.3


User provided reference genes

Program Settings