Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 2.0e-141 505.8 250 100.0
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.9e-136 489.2 250 94.0
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 4.0e-134 481.5 250 93.2
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.4e-131 473.0 250 91.2
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 7.7e-130 467.2 250 90.8
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 7.7e-130 467.2 250 92.4
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.0e-122 442.6 251 86.1
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.7e-122 442.2 244 86.9
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.5e-122 441.8 250 85.6
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.3e-121 439.1 244 86.1
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.5e-120 436.4 250 85.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.2e-117 426.8 251 84.1
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 3.5e-114 415.2 244 81.1
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 8.0e-111 404.1 244 79.9
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.1e-107 393.7 250 76.0
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.4e-107 393.3 247 76.1
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.4e-107 392.5 246 76.4
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.1e-107 391.7 250 73.2
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 7.0e-107 391.0 250 75.2
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 9.2e-107 390.6 250 76.8
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 9.2e-107 390.6 248 74.2
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 7.8e-106 387.5 196 93.9
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.3e-105 386.7 250 74.4
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 2.3e-105 386.0 250 74.8
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 3.0e-105 385.6 250 74.8
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.0e-105 385.6 248 73.4
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 5.0e-105 384.8 250 74.0
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-104 383.6 250 74.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.5e-104 382.5 250 73.6
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 7.3e-104 380.9 250 74.0
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 9.5e-104 380.6 244 73.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.6e-103 379.8 246 71.1
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 2.1e-103 379.4 248 74.2
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.4e-102 376.7 244 73.8
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.4e-102 376.7 250 72.8
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.7e-100 368.6 247 71.3
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 4.9e-100 368.2 247 72.5
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 7.1e-99 364.4 246 70.3
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.2e-98 363.6 247 70.0
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.6e-98 363.2 244 69.3
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 3.5e-98 362.1 246 70.7
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.5e-98 362.1 245 71.4
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.3e-97 360.1 246 69.9
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 3.0e-97 359.0 248 71.0
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.9e-97 358.6 251 68.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 5.1e-97 358.2 282 64.2
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.5e-96 356.7 239 69.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.3e-96 355.5 246 68.3
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 3.3e-96 355.5 243 69.1
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 7.3e-96 354.4 244 70.1
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.3e-96 354.4 242 70.2
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.3e-96 354.4 274 64.2
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.2e-95 353.6 250 70.4
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 4.7e-95 351.7 242 69.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.8e-94 349.7 243 67.9
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.8e-94 349.7 246 66.7
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 3.1e-94 349.0 246 67.9
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 5.2e-94 348.2 250 69.6
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 6.8e-94 347.8 243 70.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 6.8e-94 347.8 250 69.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.2e-93 347.1 237 67.9
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.5e-93 346.7 250 68.4
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 2.0e-93 346.3 243 68.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.6e-93 345.9 249 69.9
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.6e-93 345.9 244 70.5
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 2.6e-93 345.9 245 67.8
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 7.6e-93 344.4 243 68.3
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 7.6e-93 344.4 243 68.7
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.3e-92 343.6 249 68.7
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 2.2e-92 342.8 250 68.0
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.9e-92 342.4 200 81.5
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 4.9e-92 341.7 243 66.7
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 2.4e-91 339.3 243 67.5
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.7e-90 335.9 243 66.3
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 4.6e-90 335.1 243 66.3
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 4.6e-90 335.1 216 72.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 6.0e-90 334.7 242 67.4
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 6.0e-90 334.7 242 67.4
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 6.0e-90 334.7 243 67.1
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 7.8e-90 334.3 206 78.2
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.7e-89 333.2 243 66.7
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 1.5e-88 330.1 206 76.2
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.5e-88 330.1 205 78.0
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 3.3e-88 328.9 244 64.3
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 4.3e-88 328.6 244 66.4
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 5.6e-88 328.2 250 64.0
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.1e-86 322.4 221 70.6
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 7.6e-85 317.8 246 63.8
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 7.1e-83 311.2 216 70.4
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 7.8e-82 307.8 244 63.5
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.0e-81 305.8 258 60.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.9e-80 303.1 182 79.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 3.6e-79 298.9 275 57.8
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.9e-78 294.7 192 70.8
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 7.6e-77 291.2 216 65.3
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.2e-76 289.7 216 63.9
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.2e-76 289.7 203 67.5
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 3.8e-76 288.9 243 60.1
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 5.4e-75 285.0 217 65.9
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 5.4e-75 285.0 217 65.9
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-74 283.1 217 65.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 7.9e-74 281.2 217 65.4
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 4.3e-72 275.4 243 56.0
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 5.6e-72 275.0 232 61.2
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 7.4e-72 274.6 244 64.8
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.1e-70 270.8 248 56.9
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.4e-70 269.6 244 52.9
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.4e-70 269.6 246 51.6
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 3.1e-70 269.2 194 68.0
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-69 267.3 243 52.3
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 7.6e-69 264.6 183 67.8
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.1e-66 256.5 243 50.2
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.5e-66 255.8 143 86.0
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.3e-65 253.8 164 71.3
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.7e-65 251.1 244 53.3
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-64 250.8 202 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.8e-63 246.1 200 56.0
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.2e-63 245.0 198 63.1
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.0e-60 237.7 243 46.9
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.0e-60 237.7 196 61.2
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.2e-59 232.6 163 65.6
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.7e-57 224.6 222 50.0
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.5e-56 223.8 179 64.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-55 220.3 213 50.7
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.6e-53 213.0 214 48.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 5.9e-53 211.8 172 62.2
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 8.5e-52 208.0 166 63.3
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 1.1e-51 207.6 227 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.2e-51 204.9 194 51.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 7.9e-50 201.4 137 72.3
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 7.4e-48 194.9 194 52.6
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 3.7e-47 192.6 114 81.6
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.8e-46 190.3 237 48.1
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 4.5e-45 185.7 192 51.6
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.0e-41 174.5 110 79.1
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.1e-38 164.5 219 41.1
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.3e-38 162.2 103 72.8
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 1.0e-36 157.9 108 66.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.3e-36 157.5 104 68.3
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.5e-35 152.1 103 69.9
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 1.2e-34 151.0 225 44.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 3.3e-32 142.9 161 50.3
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.2e-23 113.6 98 56.1
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.3e-23 112.1 163 39.3
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 8.0e-18 95.1 67 65.7
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 5.2e-17 92.4 65 64.6
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.4e-16 89.4 72 59.7
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-12 75.1 81 44.4
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 8.6e-12 75.1 72 51.4
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 4.2e-11 72.8 373 22.5
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.2e-11 72.0 61 57.4
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 7.5e-08 62.0 82 37.8


User provided reference genes

Program Settings