Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G859 Trifolium pratense HOM05D003292 ORTHO05D034281 2.6e-22 107.8 54 100.0
Actinidia22439 Actinidia chinensis HOM05D003292 ORTHO05D004237 6.1e-16 86.7 44 95.5
arahy.Tifrunner.gnm1.ann1.PCB8SU Arachis hypogaea HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
arahy.Tifrunner.gnm1.ann1.V0NN3N Arachis hypogaea HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
MSTRG.27476 Avicennia marina HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
CSS0003969 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
CSS0007603 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
CAN.G476.2 Capsicum annuum HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Cpa.g.sc53.98 Carica papaya HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Ca_10553_v3 Cicer arietinum L. HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Cc02_g11130 Coffea canephora HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
COL.COLO4_38472 Corchorus olitorius HOM05D003292 ORTHO05D004237 1.8e-15 85.1 44 95.5
Haze_16867 Corylus avellana HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
DCAR_006429 Daucus carota HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Dinv31213 Davidia involucrata HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
ECA238G4082 Erigeron canadensis HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Migut.F01967 Erythranthe guttata HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Eucgr.G02857 Eucalyptus grandis HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FvH4_7g18990 Fragaria vesca HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FAN03G0674 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FAN06G1207 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FAN06G4609 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
FAN10G0369 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Glyma.10G209300 Glycine max HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Glyma.20G181300 Glycine max HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
HanXRQChr14g0456221 Helianthus annuus HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Hma1.2p1_1458F.1_g284800 Hydrangea macrophylla HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Lj2A17G38 Lonicera japonica HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Lalb_Chr06g0170371 Lupinus albus HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
MD01G1105500 Malus domestica HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
MD07G1171700 Malus domestica HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Manes.07G096900 Manihot esculenta HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Medtr1g094680 Medicago truncatula HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Oeu033867.2 Olea europaea HOM05D000784 ORTHO05D000116 1.8e-15 85.1 42 100.0
Peaxi162Scf00431g00110 Petunia axillaris HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Phvul.007G096800 Phaseolus vulgaris HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Prupe.2G211000 Prunus persica HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
PGR142G1202 Punica granatum HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Rhsim02G0095100 Rhododendron simsii HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Rhsim09G0149700 Rhododendron simsii HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
RcHm_v2.0_Chr1g0362921 Rosa chinensis HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Solyc04g025160.3 Solanum lycopersicum HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Sopen04g011550 Solanum pennellii HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
SGA_v2.0_scaffold13G06377 Striga asiatica HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
THA.LOC104823204 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
TPR.G1911 Trifolium pratense HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
vmacro04854 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
HPP92_013048 Vanilla planifolia HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
VMungo0720G0781 Vigna mungo HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.8e-15 85.1 42 100.0
Aqoxy1G01184 Aquilegia oxysepala HOM05D003292 ORTHO05D004237 3.0e-15 84.3 42 97.6
Aa31LG3G2920 Aethionema arabicum HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
AL3G21680 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
AT3G10350 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BcaB04g21216 Brassica carinata HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BcaC05g29475 Brassica carinata HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BcaC09g48102 Brassica carinata HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
A01p41910 Brassica napus HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
A05p38800 Brassica napus HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
C05p57830 Brassica napus HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BolC1t05407H Brassica oleracea HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BolC5t34438H Brassica oleracea HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BraA01t04260Z Brassica rapa HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
BraA05t22671Z Brassica rapa HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
Carub.0003s0953 Capsella rubella HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
Thhalv10020822m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
Lj5g0020782 Lotus japonicus HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
Sp3g08620 Schrenkiella parvula HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
THA.LOC104799512 Tarenaya hassleriana HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 95.2
Zm00001eb254530 Zea mays HOM05D003292 ORTHO05D004237 4.0e-15 84.0 42 97.6
Migut.D01651 Erythranthe guttata HOM05D003292 ORTHO05D004237 5.2e-15 83.6 42 97.6
vmacro03221 Vaccinium macrocarpon HOM05D003292 ORTHO05D004237 5.2e-15 83.6 44 90.9
Atru.chr12.818 Acer truncatum HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
EL10Ac6g14147 Beta vulgaris HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
CANSAT56G2535 Cannabis sativa HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
CiPaw.02G172900 Carya illinoinensis HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
AUR62043812 Chenopodium quinoa HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Nitab4.5_0002194g0030 Nicotiana tabacum HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Nitab4.5_0007148g0070 Nicotiana tabacum HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Psat6g182240 Pisum sativum HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Potri.008G037100 Populus trichocarpa HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Potri.010G225100 Populus trichocarpa HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
QL08p055153 Quercus lobata HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Sabra08G0025000 Salix brachista HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Sabra10G0174000 Salix brachista HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
Sc06g0001710 Simmondsia chinensis HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 97.6
TWI79G1368 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 6.8e-15 83.2 42 95.2
Peaxi162Scf00115g01224 Petunia axillaris HOM05D003292 ORTHO05D004237 8.9e-15 82.8 42 97.6
Cpa.g.sc65.13 Carica papaya HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
Eucgr.J00904 Eucalyptus grandis HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
Manes.04G017100 Manihot esculenta HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
Nn2g11538 Nelumbo nucifera HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
PSO063G0716 Papaver somniferum HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
PSO339G5193 Papaver somniferum HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
TPR.G6163 Trifolium pratense HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
TAR633G2338 Trochodendron aralioides HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
GSVIVG01025229001 Vitis vinifera HOM05D003292 ORTHO05D004237 1.2e-14 82.4 42 95.2
Atru.chr3.3588 Acer truncatum HOM05D003292 ORTHO05D004237 1.5e-14 82.0 42 95.2
Ciclev10028528m.g Citrus clementina HOM05D003292 ORTHO05D004237 1.5e-14 82.0 42 92.9
Lj3g0021738 Lotus japonicus HOM05D003292 ORTHO05D004237 1.5e-14 82.0 42 95.2
Medtr4g058005 Medicago truncatula HOM05D003292 ORTHO05D004237 1.5e-14 82.0 42 92.9
unitig_46.g18600 Utricularia gibba HOM05D003292 ORTHO05D004237 1.5e-14 82.0 42 97.6
Duzib128G0335 Durio zibethinus HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gohir.A05G295200 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gohir.A10G204500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gohir.D05G295900 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gohir.D10G212500 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gorai.009G312500 Gossypium raimondii HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Gorai.011G238300 Gossypium raimondii HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Thecc.10G078500 Theobroma cacao HOM05D003292 ORTHO05D004237 2.0e-14 81.6 42 97.6
Aa31LG1G12690 Aethionema arabicum HOM05D003292 ORTHO05D004237 2.6e-14 81.3 42 92.9
AagrBONN_evm.TU.Sc2ySwM_117.188 Anthoceros agrestis HOM05D003292 ORTHO05D004237 2.6e-14 81.3 42 97.6
Lalb_Chr01g0004451 Lupinus albus HOM05D003292 ORTHO05D004237 2.6e-14 81.3 42 92.9
Pp3c22_13860 Physcomitrium patens HOM05D003292 ORTHO05D004237 2.6e-14 81.3 42 97.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 92.9
Nitab4.5_0004479g0080 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 95.2
Nitab4.5_0004797g0010 Nicotiana tabacum HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 95.2
PGR119G0151 Punica granatum HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 90.5
Solyc11g069830.2 Solanum lycopersicum HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 95.2
Sopen11g028450 Solanum pennellii HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 95.2
TWI38G0463 Tripterygium wilfordii HOM05D003292 ORTHO05D004237 3.4e-14 80.9 42 95.2
CDE06G2226 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.4e-14 80.5 42 92.9
PGSC0003DMG400008075 Solanum tuberosum HOM05D003292 ORTHO05D004237 4.4e-14 80.5 42 92.9
Actinidia24123 Actinidia chinensis HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
CSS0026599 Camellia sinensis var. sinensis HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
Dinv32702 Davidia involucrata HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
Duzib168G0106 Durio zibethinus HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 90.5
Migut.D02251 Erythranthe guttata HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
Gohir.D05G105800 Gossypium hirsutum HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 90.5
Gorai.009G109800 Gossypium raimondii HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 90.5
MBI18_g21586_MAGBIO Magnolia biondii HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
Rhsim13G0097900 Rhododendron simsii HOM05D003292 ORTHO05D004237 5.7e-14 80.1 42 92.9
Psat7g144400 Pisum sativum HOM05D003292 ORTHO05D004237 7.5e-14 79.7 42 92.9
AL8G37320 Arabidopsis lyrata HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
AT5G60730 Arabidopsis thaliana HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
BcaB05g22666 Brassica carinata HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
BcaC03g13941 Brassica carinata HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
BNapus_Darmor_BZH_scaffold_38p00140 Brassica napus HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
C02p11500 Brassica napus HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
BolC2t07224H Brassica oleracea HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
Carub.0008s2141 Capsella rubella HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
CARHR274410 Cardamine hirsuta HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
CBR_g19921 Chara braunii HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 95.2
ClCG05G021130 Citrullus lanatus HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 95.2
Thhalv10013776m.g Eutrema salsugineum HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
Mapoly0037s0120 Marchantia polymorpha HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 95.2
Nitab4.5_0004126g0040 Nicotiana tabacum HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 92.9
Pp3c19_12470 Physcomitrium patens HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 95.2
Sp6g22310 Schrenkiella parvula HOM05D003292 ORTHO05D004237 9.8e-14 79.3 42 90.5
ATR0680G328 Amborella trichopoda HOM05D003292 ORTHO05D004237 1.3e-13 79.0 42 92.9
COL.COLO4_18292 Corchorus olitorius HOM05D003292 ORTHO05D004237 1.3e-13 79.0 42 90.5
ECA238G1658 Erigeron canadensis HOM05D003292 ORTHO05D004237 1.3e-13 79.0 42 92.9
Lsat_1_v5_gn_2_99761 Lactuca sativa HOM05D003292 ORTHO05D004237 1.3e-13 79.0 42 90.5
SGA_v2.0_scaffold180G39620 Striga asiatica HOM05D003292 ORTHO05D004237 1.3e-13 79.0 42 92.9
CDE08G1293 Ceratophyllum demersum HOM05D003292 ORTHO05D034281 2.2e-13 78.2 42 90.5
MELO3C012414.2 Cucumis melo HOM05D003292 ORTHO05D004237 2.2e-13 78.2 42 92.9
CsaV3_5G036130 Cucumis sativus L. HOM05D003292 ORTHO05D004237 2.2e-13 78.2 42 92.9
DCAR_006075 Daucus carota HOM05D003292 ORTHO05D004237 2.2e-13 78.2 42 90.5
Gohir.A05G105750 Gossypium hirsutum HOM05D003292 ORTHO05D004237 2.2e-13 78.2 41 90.2
Sed0016709 Sechium edule HOM05D003292 ORTHO05D004237 2.2e-13 78.2 42 92.9
SMO143G0002 Selaginella moellendorffii HOM05D003292 ORTHO05D004237 8.3e-13 76.3 42 92.9
RcHm_v2.0_Chr7g0193101 Rosa chinensis HOM05D003292 ORTHO05D034281 1.4e-12 75.5 39 92.3
Oeu056299.2 Olea europaea HOM05D003292 ORTHO05D004237 1.2e-11 72.4 42 83.3
Cre05.g245158 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.5e-11 70.9 42 83.3
Cre24.g755097 Chlamydomonas reinhardtii HOM05D003292 ORTHO05D004237 3.5e-11 70.9 42 83.3
PRCOL_00003341 Prasinoderma coloniale HOM05D003292 ORTHO05D004237 4.5e-11 70.5 42 85.7
BcaB04g21217 Brassica carinata HOM05D003292 ORTHO05D004237 2.9e-10 67.8 33 97.0
MCO10G054 Micromonas commoda HOM05D003292 ORTHO05D004237 1.5e-09 65.5 42 78.6
Lsat_1_v5_gn_2_103060 Lactuca sativa HOM05D003292 ORTHO05D004237 1.5e-06 55.5 26 100.0
Mapoly0021s0093 Marchantia polymorpha HOM05D003859 ORTHO05D004927 7.5e-06 53.1 42 59.5


User provided reference genes

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