Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.8e-66 255.8 128 100.0
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.0e-36 156.0 102 75.5
Medtr3g007880 Medicago truncatula HOM05D007227 ORTHO05D002252 7.4e-36 154.1 102 75.5
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.9e-24 115.5 84 66.7
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 1.9e-23 112.8 84 66.7
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 3.3e-20 102.1 83 61.4
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 3.3e-20 102.1 94 52.1
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 1.7e-19 99.8 111 52.3
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 3.7e-19 98.6 84 60.7
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 4.8e-19 98.2 94 57.4
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.1e-18 97.1 112 49.1
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 1.1e-18 97.1 83 60.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.8e-18 96.3 87 58.6
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 9.1e-18 94.0 85 58.8
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.2e-17 93.6 74 62.2
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 1.6e-17 93.2 78 60.3
LjContig00272g0019714 Lotus japonicus HOM05D007227 ORTHO05D002252 2.0e-17 92.8 83 60.2
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 2.0e-17 92.8 84 58.3
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 2.0e-17 92.8 95 51.6
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 3.5e-17 92.0 111 48.6
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 4.5e-17 91.7 83 55.4
arahy.Tifrunner.gnm1.ann1.3LC685 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.0e-16 90.5 111 47.7
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 1.7e-16 89.7 91 53.8
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 1.7e-16 89.7 91 52.7
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 2.2e-16 89.4 90 55.6
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.8e-16 88.6 90 55.6
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 8.5e-16 87.4 93 49.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.9e-15 86.3 99 48.5
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 5.5e-15 84.7 104 49.0
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-14 83.2 91 44.0
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.6e-14 83.2 81 50.6
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.7e-14 81.6 91 44.0
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 6.1e-14 81.3 76 55.3
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.0e-13 80.5 91 42.9
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.0e-13 80.5 88 50.0
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 1.4e-13 80.1 91 42.9
TWI31G1433 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.4e-13 80.1 82 48.8
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.8e-13 79.7 81 51.9
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 5.2e-13 78.2 89 49.4
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.8e-13 77.8 75 57.3
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 8.8e-13 77.4 100 43.0
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.6e-12 75.9 82 48.8
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.4e-12 75.5 82 45.1
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 3.4e-12 75.5 89 44.9
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 4.4e-12 75.1 89 48.3
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 9.8e-12 73.9 75 48.0
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.7e-11 73.2 92 39.1
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 3.7e-11 72.0 78 47.4
FAN24G0729 Fragaria x ananassa HOM05D007227 ORTHO05D002252 6.3e-11 71.2 68 51.5
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.4e-10 69.3 95 37.9
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 4.1e-10 68.6 72 47.2
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 5.4e-10 68.2 74 39.2
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 9.1e-10 67.4 88 46.6
Prupe.8G099800 Prunus persica HOM05D007227 ORTHO05D002252 1.2e-09 67.0 79 44.3
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 1.6e-09 66.6 93 45.2
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 2.7e-09 65.9 102 37.3
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 2.7e-09 65.9 71 46.5
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.5e-09 65.5 95 34.7
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.5e-09 65.5 76 44.7
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.9e-09 64.7 77 44.2
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 7.7e-09 64.3 95 33.7
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 7.7e-09 64.3 72 50.0
MSTRG.27703 Avicennia marina HOM05D007227 ORTHO05D002252 1.3e-08 63.5 88 40.9
CSS0026369 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 1.3e-08 63.5 73 41.1
Glyma.17G150700 Glycine max HOM05D007227 ORTHO05D002252 1.3e-08 63.5 43 69.8
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 1.3e-08 63.5 79 40.5
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.7e-08 63.2 76 43.4
CsaV3_2G014630 Cucumis sativus L. HOM05D007227 ORTHO05D002252 2.9e-08 62.4 80 37.5
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.9e-08 62.4 95 32.6
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 5.0e-08 61.6 92 32.6
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 5.0e-08 61.6 88 37.5
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 6.5e-08 61.2 82 35.4
Migut.N01231 Erythranthe guttata HOM05D007227 ORTHO05D002252 6.5e-08 61.2 104 33.7
SalBow6G0041 Salvia bowleyana HOM05D007227 ORTHO05D002252 8.5e-08 60.8 86 39.5
SalBow6G1279 Salvia bowleyana HOM05D007227 ORTHO05D002252 8.5e-08 60.8 86 39.5
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 1.1e-07 60.5 71 43.7
Glyma.14G013250 Glycine max HOM05D007227 ORTHO05D002252 1.1e-07 60.5 43 67.4
PGR042G2841 Punica granatum HOM05D007227 ORTHO05D002252 1.1e-07 60.5 95 38.9
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 1.5e-07 60.1 84 32.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.9e-07 59.7 80 40.0
arahy.Tifrunner.gnm1.ann1.YB55U6 Arachis hypogaea HOM05D007227 ORTHO05D002252 1.9e-07 59.7 62 48.4
HanXRQChr16g0505811 Helianthus annuus HOM05D007227 ORTHO05D002252 1.9e-07 59.7 88 31.8
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 2.5e-07 59.3 83 37.3
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 2.5e-07 59.3 83 33.7
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.5e-07 59.3 74 43.2
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 2.5e-07 59.3 106 36.8
AUR62011338 Chenopodium quinoa HOM05D007227 ORTHO05D002252 4.2e-07 58.5 78 42.3
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 4.2e-07 58.5 112 35.7
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 5.5e-07 58.2 90 35.6
Sc08g0000440 Simmondsia chinensis HOM05D007227 ORTHO05D002252 5.5e-07 58.2 99 35.4
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 9.4e-07 57.4 75 45.3
Lsat_1_v5_gn_9_109540 Lactuca sativa HOM05D007227 ORTHO05D002252 1.2e-06 57.0 70 37.1
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-06 56.6 98 32.7
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.6e-06 56.6 119 30.3
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 2.1e-06 56.2 78 30.8
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.1e-06 56.2 87 39.1
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 2.1e-06 56.2 70 40.0
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.7e-06 55.8 98 33.7
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 2.7e-06 55.8 91 36.3
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.6e-06 55.5 78 38.5
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.6e-06 55.5 78 38.5
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.6e-06 55.5 75 40.0
Duzib132G0468 Durio zibethinus HOM05D007227 ORTHO05D002252 3.6e-06 55.5 90 35.6
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 3.6e-06 55.5 75 34.7
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 3.6e-06 55.5 91 35.2
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 3.6e-06 55.5 100 33.0
ECA236G1258 Erigeron canadensis HOM05D007227 ORTHO05D002252 4.7e-06 55.1 87 28.7
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 4.7e-06 55.1 65 38.5
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 4.7e-06 55.1 83 36.1


User provided reference genes

Program Settings