Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8553 Trifolium pratense HOM05D007157 ORTHO05D009045 1.3e-301 1039.3 681 100.0
TPR.G29476 Trifolium pratense HOM05D007157 ORTHO05D009045 1.1e-231 807.0 656 82.9
Medtr7g027940 Medicago truncatula HOM05D007157 ORTHO05D009045 2.3e-216 756.1 657 83.1
Glyma.16G053700 Glycine max HOM05D007157 ORTHO05D009045 3.0e-160 569.7 635 70.2
Lj1g0010660 Lotus japonicus HOM05D007157 ORTHO05D009045 2.0e-156 557.0 647 66.0
VMungo1383G0567 Vigna mungo HOM05D007157 ORTHO05D009045 7.0e-149 531.9 645 65.4
Lalb_Chr00c01g0403821 Lupinus albus HOM05D007157 ORTHO05D009045 1.0e-147 528.1 636 68.1
arahy.Tifrunner.gnm1.ann1.VP4GDR Arachis hypogaea HOM05D007157 ORTHO05D009045 1.9e-146 523.9 639 65.1
arahy.Tifrunner.gnm1.ann1.LR7EIQ Arachis hypogaea HOM05D007157 ORTHO05D009045 1.8e-144 517.3 639 64.8
Psat3g167400 Pisum sativum HOM05D007157 ORTHO05D009045 3.7e-142 509.6 455 88.6
Haze_14901 Corylus avellana HOM05D007157 ORTHO05D009045 5.0e-131 472.6 651 62.2
Cfa007204 Carpinus fangiana HOM05D007157 ORTHO05D009045 5.2e-128 462.6 641 62.9
FAN05G0711 Fragaria x ananassa HOM05D007157 ORTHO05D009045 5.7e-127 459.1 641 58.7
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 9.8e-127 458.4 644 55.9
Prupe.3G308900 Prunus persica HOM05D007157 ORTHO05D009045 1.3e-126 458.0 644 59.0
FvH4_6g53850 Fragaria vesca HOM05D007157 ORTHO05D009045 2.8e-126 456.8 641 58.3
FAN14G2967 Fragaria x ananassa HOM05D007157 ORTHO05D009045 2.8e-126 456.8 641 58.3
RcHm_v2.0_Chr2g0175991 Rosa chinensis HOM05D007157 ORTHO05D009045 5.9e-124 449.1 638 57.8
Dinv25644 Davidia involucrata HOM05D007157 ORTHO05D009045 2.5e-122 443.7 640 62.0
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 6.1e-121 439.1 640 60.2
Glyma.19G095500 Glycine max HOM05D007157 ORTHO05D009045 1.4e-120 438.0 577 54.2
Atru.chr6.2599 Acer truncatum HOM05D007157 ORTHO05D009045 4.0e-120 436.4 641 60.2
Phvul.001G089400 Phaseolus vulgaris HOM05D007157 ORTHO05D009045 1.7e-118 431.0 415 57.3
Ca_12649_v3 Cicer arietinum L. HOM05D007157 ORTHO05D009045 1.6e-116 424.5 455 74.3
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 2.0e-116 424.1 641 53.0
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 5.0e-115 419.5 643 56.0
ClCG11G009400 Citrullus lanatus HOM05D007157 ORTHO05D009045 4.3e-114 416.4 637 58.7
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 9.5e-114 415.2 638 58.6
Rhsim10G0004500 Rhododendron simsii HOM05D007157 ORTHO05D009045 1.6e-113 414.5 635 56.9
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 2.1e-113 414.1 635 60.5
Sc03g0006270 Simmondsia chinensis HOM05D007157 ORTHO05D009045 2.1e-113 414.1 640 58.6
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 1.4e-112 411.4 639 59.2
Peaxi162Scf00420g00637 Petunia axillaris HOM05D007157 ORTHO05D009045 5.2e-112 409.5 638 54.9
CiPaw.03G058300 Carya illinoinensis HOM05D007157 ORTHO05D009045 6.8e-112 409.1 636 60.5
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 8.9e-112 408.7 644 58.7
Manes.04G088300 Manihot esculenta HOM05D007157 ORTHO05D009045 2.9e-110 403.7 639 58.5
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 5.4e-109 399.4 641 55.1
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 5.4e-109 399.4 637 58.7
MSTRG.23478 Avicennia marina HOM05D007157 ORTHO05D009045 2.0e-108 397.5 640 57.8
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 3.5e-108 396.7 641 57.7
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 3.5e-108 396.7 641 57.7
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 2.3e-107 394.0 640 59.2
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 5.6e-106 389.4 640 58.8
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 1.6e-105 387.9 638 54.7
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 4.7e-105 386.3 638 54.9
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 1.4e-104 384.8 638 53.4
EL10Ac6g15443 Beta vulgaris HOM05D007157 ORTHO05D009045 2.3e-104 384.0 642 57.6
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 5.2e-104 382.9 645 53.6
Sabra16G0209300 Salix brachista HOM05D007157 ORTHO05D009045 5.2e-104 382.9 636 57.2
MELO3C008172.2 Cucumis melo HOM05D007157 ORTHO05D009045 7.5e-103 379.0 405 50.9
CAN.G473.124 Capsicum annuum HOM05D007157 ORTHO05D009045 1.3e-102 378.3 638 54.4
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 1.7e-102 377.9 405 50.6
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 6.4e-102 375.9 640 57.2
Aqoxy5G03262 Aquilegia oxysepala HOM05D007157 ORTHO05D009045 8.3e-102 375.6 640 57.3
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 2.4e-101 374.0 640 57.2
Lsat_1_v5_gn_0_3360 Lactuca sativa HOM05D007157 ORTHO05D009045 2.3e-99 367.5 637 57.6
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 1.9e-98 364.4 638 38.4
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 3.3e-98 363.6 639 55.9
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 3.3e-98 363.6 638 54.4
Migut.H00838 Erythranthe guttata HOM05D007157 ORTHO05D009045 5.6e-98 362.8 619 57.0
AUR62003414 Chenopodium quinoa HOM05D000173 ORTHO05D006747 2.8e-97 360.5 641 54.3
QL02p070811 Quercus lobata HOM05D007157 ORTHO05D009045 6.2e-97 359.4 642 58.7
Cpa.g.c35912 Carica papaya HOM05D007157 ORTHO05D009045 3.1e-96 357.1 408 48.5
Potri.001G326800 Populus trichocarpa HOM05D007157 ORTHO05D009045 5.2e-96 356.3 636 52.8
AUR62029427 Chenopodium quinoa HOM05D007157 ORTHO05D009045 5.8e-95 352.8 642 41.0
Eucgr.H03351 Eucalyptus grandis HOM05D007157 ORTHO05D009045 1.4e-93 348.2 407 46.9
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 6.0e-92 342.8 639 53.7
HanXRQChr17g0551661 Helianthus annuus HOM05D007157 ORTHO05D009045 7.8e-92 342.4 395 49.4
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 1.0e-91 342.0 639 54.8
PSO017G3067 Papaver somniferum HOM05D007157 ORTHO05D009045 2.3e-91 340.9 640 54.2
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 1.9e-90 337.8 640 50.8
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 3.3e-90 337.0 640 53.8
vmacro05975 Vaccinium macrocarpon HOM05D007157 ORTHO05D009045 7.6e-87 325.9 605 54.5
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 1.3e-86 325.1 529 58.4
Lj5A791T21 Lonicera japonica HOM05D007157 ORTHO05D009045 1.4e-85 321.6 643 50.5
SalBow3G1100 Salvia bowleyana HOM05D007157 ORTHO05D009045 1.4e-85 321.6 597 55.8
SalBow3G1401 Salvia bowleyana HOM05D007157 ORTHO05D009045 1.9e-85 321.2 597 55.6
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 9.3e-85 318.9 645 48.5
Carub.0006s1227 Capsella rubella HOM05D007157 ORTHO05D009045 1.2e-84 318.5 639 52.1
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 1.3e-83 315.1 641 46.8
Aa31LG11G14870 Aethionema arabicum HOM05D007157 ORTHO05D009045 3.9e-83 313.5 639 48.2
Ah.03g148180 Amaranthus hybridus HOM05D007157 ORTHO05D009045 3.9e-83 313.5 637 42.7
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 6.6e-83 312.8 408 43.6
SHI04033 Sapria himalayana HOM05D007157 ORTHO05D009045 8.7e-83 312.4 637 33.6
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 1.1e-82 312.0 408 43.6
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 3.6e-81 307.0 641 46.6
THA.LOC104802372 Tarenaya hassleriana HOM05D007157 ORTHO05D009045 1.2e-79 302.0 412 41.7
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 2.0e-79 301.2 400 42.5
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 3.4e-79 300.4 408 41.9
ATR0012G053 Amborella trichopoda HOM05D007157 ORTHO05D009045 3.5e-76 290.4 401 42.9
CDE01G0454 Ceratophyllum demersum HOM05D007157 ORTHO05D009045 2.3e-75 287.7 637 49.0
Hma1.2p1_0812F.1_g222250 Hydrangea macrophylla HOM05D007157 ORTHO05D009045 3.1e-72 277.3 455 62.9
SGA_v2.0_scaffold211G42168 Striga asiatica HOM05D007157 ORTHO05D009045 1.7e-70 271.6 396 41.9
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 1.6e-68 265.0 327 47.4
FAN09G1907 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.3e-67 261.9 292 52.4
PGR083G0651 Punica granatum HOM05D007157 ORTHO05D009045 4.3e-66 256.9 414 37.7
Hund04273 Selenicereus undatus HOM05D007157 ORTHO05D009045 3.3e-58 230.7 606 44.1
Zm00001eb093300 Zea mays HOM05D007157 ORTHO05D009045 6.5e-54 216.5 332 39.2
HPP92_009778 Vanilla planifolia HOM05D007157 ORTHO05D009045 1.8e-48 198.4 253 42.3
FAN09G1568 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.2e-44 185.7 347 62.2
TPR.G29386 Trifolium pratense HOM05D007157 ORTHO05D009045 2.4e-40 171.4 96 89.6
BcaC02g07725 Brassica carinata HOM05D007157 ORTHO05D009045 2.6e-39 167.9 246 40.2
Cc00_g20250 Coffea canephora HOM05D007157 ORTHO05D009045 1.4e-35 155.6 362 61.6
TAR375G0551 Trochodendron aralioides HOM05D007157 ORTHO05D009045 6.7e-35 153.3 142 54.2
BolC4t27904H Brassica oleracea HOM05D007157 ORTHO05D009045 1.8e-32 145.2 246 37.4
TAR375G1084 Trochodendron aralioides HOM05D007157 ORTHO05D009045 5.9e-31 140.2 190 48.4
Lj8P534T4 Lonicera japonica HOM05D007157 ORTHO05D009045 7.7e-31 139.8 135 51.9
Actinidia05886 Actinidia chinensis HOM05D007157 ORTHO05D009045 9.7e-26 122.9 122 52.5
TAR375G0854 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.4e-16 92.4 94 54.3
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 1.0e-11 76.3 284 28.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.6e-10 71.6 284 27.5
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 3.4e-10 71.2 335 26.0
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 3.4e-10 71.2 284 27.1
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.7e-09 68.9 251 27.5
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.7e-09 68.9 251 27.5
CDE02G3572 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 1.7e-09 68.9 286 25.5
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 8.3e-09 66.6 215 26.5
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 1.1e-08 66.2 335 25.7
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 1.4e-08 65.9 335 25.7
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 2.4e-08 65.1 251 27.1
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 2.4e-08 65.1 333 25.8
CDE09G0275 Ceratophyllum demersum HOM05D004783 ORTHO05D005581 4.1e-08 64.3 349 25.5
MD05G1041400 Malus domestica HOM05D004783 ORTHO05D005581 4.1e-08 64.3 276 25.0
RcHm_v2.0_Chr1g0326571 Rosa chinensis HOM05D006556 ORTHO05D008146 4.1e-08 64.3 312 22.1
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 5.4e-08 63.9 304 26.3
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 7.0e-08 63.5 261 26.4
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 9.2e-08 63.2 261 26.1
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 1.2e-07 62.8 251 25.1
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 1.6e-07 62.4 257 26.8
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 5.9e-07 60.5 364 24.2
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 5.9e-07 60.5 264 22.7
RcHm_v2.0_Chr1g0326501 Rosa chinensis HOM05D006556 ORTHO05D008146 7.8e-07 60.1 271 23.2
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 1.0e-06 59.7 271 22.5
DCAR_016913 Daucus carota HOM05D006596 ORTHO05D008497 1.0e-06 59.7 218 27.1
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 1.3e-06 59.3 252 24.2
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 1.3e-06 59.3 339 22.7
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 1.3e-06 59.3 350 24.9
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.7e-06 58.9 266 23.3
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 1.7e-06 58.9 362 24.3
Lsat_1_v5_gn_2_97841 Lactuca sativa HOM05D007402 ORTHO05D003673 2.3e-06 58.5 355 21.7
Oeu062248.1 Olea europaea HOM05D004783 ORTHO05D005581 2.3e-06 58.5 277 24.9
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 3.8e-06 57.8 342 25.7
PGR119G2361 Punica granatum HOM05D004783 ORTHO05D005581 3.8e-06 57.8 251 22.3
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 6.6e-06 57.0 251 23.9
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 6.6e-06 57.0 296 21.6
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 6.6e-06 57.0 215 25.6
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 6.6e-06 57.0 275 23.6
Cfa000760 Carpinus fangiana HOM05D006556 ORTHO05D008146 8.6e-06 56.6 234 23.9
QL02p039304 Quercus lobata HOM05D004783 ORTHO05D005581 8.6e-06 56.6 252 25.4


User provided reference genes

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