Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8534 Trifolium pratense HOM05D007950 ORTHO05D009951 8.4e-31 136.3 67 100.0
Medtr4g012610 Medicago truncatula HOM05D007950 ORTHO05D009951 1.4e-22 109.0 67 80.6
TPR.G24171 Trifolium pratense HOM05D007950 ORTHO05D009951 2.4e-22 108.2 67 80.6
Medtr4g012580 Medicago truncatula HOM05D007950 ORTHO05D009951 5.1e-20 100.5 67 73.1
Psat7g251240 Pisum sativum HOM05D007950 ORTHO05D009951 5.1e-20 100.5 67 73.1
Lj3g0016273 Lotus japonicus HOM05D007950 ORTHO05D009951 2.5e-19 98.2 67 71.6
Glyma.08G206200 Glycine max HOM05D007950 ORTHO05D009951 1.6e-18 95.5 63 76.2
Phvul.010G150100 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 4.0e-17 90.9 67 67.2
Glyma.07G005901 Glycine max HOM05D000325 ORTHO05D002025 6.9e-17 90.1 62 74.2
arahy.Tifrunner.gnm1.ann1.6Z76EK Arachis hypogaea HOM05D007950 ORTHO05D009951 1.5e-16 89.0 69 66.7
Lalb_Chr04g0262731 Lupinus albus HOM05D007950 ORTHO05D009951 3.8e-15 84.3 67 59.7
QL05p023317 Quercus lobata HOM05D007950 ORTHO05D009951 6.4e-15 83.6 66 59.1
Manes.11G045700 Manihot esculenta HOM05D007950 ORTHO05D009951 2.7e-13 78.2 65 56.9
Gohir.1Z049586 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.5e-13 77.8 67 53.7
Gohir.D03G063400 Gossypium hirsutum HOM05D007950 ORTHO05D009951 4.6e-13 77.4 67 53.7
Gorai.002G059800 Gossypium raimondii HOM05D007950 ORTHO05D009951 4.6e-13 77.4 67 53.7
Nn8g39199 Nelumbo nucifera HOM05D007950 ORTHO05D009951 2.3e-12 75.1 67 53.7
Nn2g11757 Nelumbo nucifera HOM05D007950 ORTHO05D009951 3.9e-12 74.3 67 52.2
CiPaw.02G150700 Carya illinoinensis HOM05D007950 ORTHO05D009951 6.7e-12 73.6 64 53.1
Haze_16407 Corylus avellana HOM05D007950 ORTHO05D009951 6.7e-12 73.6 66 53.0
Haze_16408 Corylus avellana HOM05D007950 ORTHO05D009951 6.7e-12 73.6 66 53.0
FAN26G3407 Fragaria x ananassa HOM05D007950 ORTHO05D009951 1.1e-11 72.8 66 54.5
Potri.001G181701 Populus trichocarpa HOM05D007950 ORTHO05D009951 1.1e-11 72.8 65 50.8
GSVIVG01015395001 Vitis vinifera HOM05D007950 ORTHO05D009951 1.5e-11 72.4 66 51.5
TAR636G2963 Trochodendron aralioides HOM05D007950 ORTHO05D009951 2.5e-11 71.6 64 50.0
FvH4_1g04841 Fragaria vesca HOM05D007950 ORTHO05D009951 4.3e-11 70.9 66 51.5
FAN19G2230 Fragaria x ananassa HOM05D007950 ORTHO05D009951 4.3e-11 70.9 66 51.5
FAN23G0617 Fragaria x ananassa HOM05D007950 ORTHO05D009951 5.6e-11 70.5 66 53.0
vmacro20696 Vaccinium macrocarpon HOM05D007950 ORTHO05D009951 5.6e-11 70.5 65 50.8
Ciclev10010772m.g Citrus clementina HOM05D007950 ORTHO05D009951 9.6e-11 69.7 66 50.0
Sc10g0007380 Simmondsia chinensis HOM05D007950 ORTHO05D009951 9.6e-11 69.7 64 46.9
RcHm_v2.0_Chr2g0090511 Rosa chinensis HOM05D007950 ORTHO05D009951 1.3e-10 69.3 66 48.5
QL02p085472 Quercus lobata HOM05D007950 ORTHO05D009951 1.6e-10 68.9 65 44.6
CSS0015996 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 2.8e-10 68.2 64 48.4
Gohir.A05G130600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 3.7e-10 67.8 64 53.1
Eucgr.J02984 Eucalyptus grandis HOM05D007950 ORTHO05D009951 4.8e-10 67.4 58 53.4
Thecc.06G089600 Theobroma cacao HOM05D007950 ORTHO05D009951 4.8e-10 67.4 64 50.0
Actinidia20354 Actinidia chinensis HOM05D007950 ORTHO05D009951 6.2e-10 67.0 62 48.4
Eucgr.C01044 Eucalyptus grandis HOM05D007950 ORTHO05D009951 8.2e-10 66.6 65 50.8
Manes.16G116501 Manihot esculenta HOM05D007950 ORTHO05D009951 8.2e-10 66.6 66 47.0
Gohir.D05G129500 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.1e-09 66.2 64 51.6
Psat1g042280 Pisum sativum HOM05D007950 ORTHO05D009951 1.1e-09 66.2 65 46.2
PGR102G0372 Punica granatum HOM05D007950 ORTHO05D009951 1.1e-09 66.2 66 47.0
Thecc.09G111000 Theobroma cacao HOM05D007950 ORTHO05D009951 1.1e-09 66.2 66 47.0
Gohir.A06G062300 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.4e-09 65.9 63 47.6
Sed0000041 Sechium edule HOM05D007950 ORTHO05D009951 1.4e-09 65.9 50 54.0
Gohir.D06G060600 Gossypium hirsutum HOM05D007950 ORTHO05D009951 1.8e-09 65.5 63 47.6
MD02G1047700 Malus domestica HOM05D007950 ORTHO05D009951 2.4e-09 65.1 66 45.5
arahy.Tifrunner.gnm1.ann1.7G47EE Arachis hypogaea HOM05D007950 ORTHO05D009951 5.3e-09 63.9 65 46.2
arahy.Tifrunner.gnm1.ann1.U6R6BR Arachis hypogaea HOM05D007950 ORTHO05D009951 5.3e-09 63.9 65 46.2
CSS0048253 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 5.3e-09 63.9 62 48.4
MD15G1186200 Malus domestica HOM05D007950 ORTHO05D009951 5.3e-09 63.9 66 43.9
Prupe.7G230500 Prunus persica HOM05D007950 ORTHO05D009951 5.3e-09 63.9 61 47.5
Gorai.010G070600 Gossypium raimondii HOM05D007950 ORTHO05D009951 6.9e-09 63.5 63 46.0
CSS0032282 Camellia sinensis var. sinensis HOM05D007950 ORTHO05D009951 9.0e-09 63.2 61 50.8
CiPaw.04G164400 Carya illinoinensis HOM05D007950 ORTHO05D009951 9.0e-09 63.2 61 45.9
Potri.003G054001 Populus trichocarpa HOM05D007950 ORTHO05D009951 2.6e-08 61.6 64 50.0
CsaV3_1G030490 Cucumis sativus L. HOM05D007950 ORTHO05D009951 3.4e-08 61.2 65 38.5
CDE06G0019 Ceratophyllum demersum HOM05D007950 ORTHO05D009951 5.8e-08 60.5 65 43.1
TPR.G35274 Trifolium pratense HOM05D007950 ORTHO05D009951 5.8e-08 60.5 63 42.9
Cc04_g03310 Coffea canephora HOM05D007950 ORTHO05D009951 7.6e-08 60.1 67 46.3
CiPaw.03G232500 Carya illinoinensis HOM05D007950 ORTHO05D009951 1.0e-07 59.7 64 45.3
Manes.03G020101 Manihot esculenta HOM05D007950 ORTHO05D009951 1.7e-07 58.9 67 40.3
ATR0980G014 Amborella trichopoda HOM05D007950 ORTHO05D009951 2.9e-07 58.2 67 37.3
FAN05G0591 Fragaria x ananassa HOM05D007950 ORTHO05D009951 2.9e-07 58.2 68 45.6
SalBow2G2396 Salvia bowleyana HOM05D007950 ORTHO05D009951 2.9e-07 58.2 53 50.9
FAN14G2438 Fragaria x ananassa HOM05D007950 ORTHO05D009951 3.8e-07 57.8 68 45.6
Phvul.003G020900 Phaseolus vulgaris HOM05D007950 ORTHO05D009951 4.9e-07 57.4 65 41.5
Cc06_g09630 Coffea canephora HOM05D007950 ORTHO05D009951 2.5e-06 55.1 62 43.5
Migut.D01581 Erythranthe guttata HOM05D007950 ORTHO05D009951 2.5e-06 55.1 65 38.5
Glyma.09G123700 Glycine max HOM05D007950 ORTHO05D009951 4.2e-06 54.3 65 43.1


User provided reference genes

Program Settings