Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 6.7e-119 430.6 210 100.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.2e-106 389.0 191 99.5
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 2.5e-105 385.6 191 98.4
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.2e-105 385.2 193 96.9
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 7.2e-105 384.0 191 97.4
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.0e-103 378.6 191 95.8
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 6.8e-103 377.5 192 93.8
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 6.8e-103 377.5 189 96.3
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 8.8e-103 377.1 189 95.8
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 8.8e-103 377.1 189 95.8
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 8.8e-103 377.1 189 95.8
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 2.6e-102 375.6 189 95.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.4e-102 375.2 189 94.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 3.4e-102 375.2 191 95.8
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.4e-102 374.8 189 95.2
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.4e-102 374.8 191 93.7
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 5.7e-102 374.4 191 93.2
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.7e-102 374.4 191 93.2
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.7e-102 374.4 191 93.7
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 7.5e-102 374.0 191 93.7
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 9.8e-102 373.6 191 94.2
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 9.8e-102 373.6 188 95.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 9.8e-102 373.6 191 94.2
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 9.8e-102 373.6 190 94.2
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 9.8e-102 373.6 190 94.2
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.3e-101 373.2 191 93.7
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.7e-101 372.9 191 92.7
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 2.2e-101 372.5 191 93.2
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.2e-101 372.5 191 93.2
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.2e-101 372.5 191 93.7
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.2e-101 372.5 191 93.7
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 3.7e-101 371.7 189 94.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.1e-100 370.2 191 92.1
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.1e-100 370.2 191 92.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 1.4e-100 369.8 191 92.7
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.4e-100 369.8 191 93.7
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.8e-100 369.4 191 92.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.8e-100 369.4 195 91.3
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.8e-100 369.4 191 92.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 2.4e-100 369.0 188 92.6
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 4.1e-100 368.2 191 92.1
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.4e-100 367.9 191 91.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 5.4e-100 367.9 191 92.7
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 7.0e-100 367.5 191 91.6
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 7.0e-100 367.5 191 92.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.2e-99 366.7 192 91.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.2e-99 366.7 191 91.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.6e-99 366.3 210 86.7
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.7e-99 365.5 191 93.2
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.7e-99 365.5 191 91.6
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.0e-98 363.6 191 92.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.3e-98 363.2 191 92.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.7e-98 362.8 189 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 2.3e-98 362.5 191 90.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-98 362.5 195 90.8
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 2.3e-98 362.5 191 89.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.9e-98 362.1 191 90.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.9e-98 362.1 191 91.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.8e-98 361.7 191 90.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 3.8e-98 361.7 198 86.9
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.8e-98 361.7 191 90.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.8e-98 361.7 191 90.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.8e-98 361.7 191 90.6
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 5.0e-98 361.3 191 89.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 8.6e-98 360.5 188 91.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.5e-97 359.8 216 81.9
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 3.3e-97 358.6 192 88.5
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.3e-97 358.6 191 89.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 4.2e-97 358.2 188 89.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 9.5e-97 357.1 232 78.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.6e-96 356.3 188 89.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.8e-96 355.5 189 89.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.8e-96 355.5 201 86.6
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.6e-96 355.1 188 91.5
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.7e-96 354.8 198 86.9
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.0e-95 353.6 191 86.4
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.0e-95 353.6 191 86.9
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.8e-95 352.8 191 85.9
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.3e-95 352.4 201 86.1
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.0e-95 351.7 191 85.9
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 6.8e-95 350.9 216 80.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 8.9e-95 350.5 189 86.8
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.2e-94 350.1 195 87.7
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.5e-94 349.7 191 85.9
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 2.0e-94 349.4 183 91.3
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.3e-93 346.7 191 84.8
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 2.8e-93 345.5 191 84.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 8.3e-93 344.0 191 83.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-92 343.6 191 83.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-92 343.6 188 84.6
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-92 343.2 188 84.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.2e-92 342.0 188 84.0
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.1e-92 341.7 188 84.0
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 5.4e-92 341.3 188 83.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.0e-91 339.3 191 81.7
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.5e-91 338.6 188 84.0
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 5.9e-91 337.8 189 81.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-90 336.7 189 82.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 3.9e-90 335.1 191 80.6
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-89 332.0 181 88.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.3e-89 332.0 181 88.4
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.1e-88 329.3 191 79.1
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.1e-88 329.3 173 89.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 8.0e-88 327.4 173 89.6
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 8.0e-88 327.4 167 95.8
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.4e-86 321.6 191 80.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.8e-86 320.5 188 77.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.7e-85 319.7 188 77.7
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.2e-84 315.5 160 93.1
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.9e-82 308.5 160 90.6
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 4.7e-80 301.6 161 91.3
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 3.1e-79 298.9 160 88.1
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.0e-74 283.9 171 81.3
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 3.6e-72 275.4 209 67.5
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 4.1e-68 261.9 188 67.6
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.1e-63 247.3 140 85.0
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.8e-61 238.8 190 61.1
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-60 237.3 183 62.3
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.3e-56 223.8 113 92.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.3e-56 223.8 131 86.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.3e-56 223.8 206 52.4
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.2e-56 221.5 149 72.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.9e-53 212.6 109 94.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 5.4e-52 208.4 158 65.8
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.2e-51 207.2 109 91.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.0e-51 204.9 111 89.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 7.8e-51 204.5 112 84.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 5.1e-50 201.8 106 84.9
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 9.6e-41 171.0 81 97.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.6e-40 170.2 81 97.5
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.0e-39 165.6 81 93.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 4.5e-38 162.2 84 94.0
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.7e-37 160.2 79 92.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.4e-36 157.1 81 86.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.7e-35 152.9 74 95.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.5e-35 152.5 81 91.4
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.3e-33 145.6 155 45.8
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-32 144.1 71 94.4
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.4e-31 139.8 71 88.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.2e-29 133.3 87 80.5
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 8.7e-26 121.3 68 79.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.3e-25 119.0 68 77.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.3e-25 119.0 68 77.9
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 3.0e-18 96.3 47 91.5
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 8.8e-18 94.7 51 78.4
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 7.2e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 7.2e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 7.2e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 7.2e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 9.4e-12 74.7 37 89.2


User provided reference genes

Program Settings