Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 7.8e-269 929.9 462 100.0
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 2.4e-230 802.0 434 90.8
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.8e-228 795.8 434 90.1
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.6e-216 755.4 433 84.8
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.7e-215 752.7 434 83.6
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 2.2e-215 752.3 434 84.6
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 5.0e-215 751.1 435 84.6
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 4.3e-211 738.0 434 83.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 2.0e-203 712.6 421 84.6
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 5.3e-193 677.9 434 80.6
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.2e-191 672.5 436 74.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.7e-189 665.6 430 73.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.8e-188 662.9 434 74.0
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.0e-187 659.4 437 73.5
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.8e-186 654.8 437 73.7
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 6.3e-186 654.4 437 73.9
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.5e-183 644.4 439 72.0
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.1e-182 643.7 434 72.8
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.1e-182 643.7 444 71.6
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.6e-181 639.8 414 75.8
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.3e-180 636.0 447 70.2
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.2e-179 633.6 431 69.4
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.4e-179 632.1 415 73.3
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 4.4e-179 631.7 416 73.6
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 7.5e-179 630.9 417 71.9
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.8e-179 630.6 439 70.6
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.8e-179 630.6 439 70.6
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 4.8e-178 628.2 434 71.7
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 6.3e-178 627.9 426 71.1
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.1e-177 627.1 431 69.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.8e-177 626.3 422 72.3
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 4.1e-177 625.2 421 73.4
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 4.1e-177 625.2 437 70.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 4.1e-177 625.2 437 70.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.1e-177 625.2 440 69.3
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 7.0e-177 624.4 440 69.1
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.0e-177 624.4 415 72.3
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 1.2e-176 623.6 436 69.7
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.5e-176 622.1 441 69.6
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.7e-176 620.9 440 69.8
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 7.7e-176 620.9 437 69.8
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.3e-175 620.2 434 67.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.7e-175 619.8 437 69.6
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.7e-175 619.8 476 66.2
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.2e-175 619.4 438 69.6
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 2.9e-175 619.0 446 68.8
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 5.0e-175 618.2 439 69.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.5e-175 617.8 439 69.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-174 617.1 440 69.5
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.1e-174 617.1 434 67.3
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.5e-174 616.7 432 70.4
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.5e-174 616.7 428 69.9
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 3.2e-174 615.5 437 68.9
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 5.5e-174 614.8 443 67.5
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 5.5e-174 614.8 434 70.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 7.2e-174 614.4 433 70.4
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 9.4e-174 614.0 469 67.0
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.2e-173 613.6 439 67.7
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.7e-173 612.5 449 66.6
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.0e-172 610.5 455 67.0
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.4e-172 610.1 435 68.0
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.3e-172 609.4 439 67.0
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 2.3e-172 609.4 432 69.4
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.0e-172 609.0 425 68.7
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 3.0e-172 609.0 437 69.3
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 3.0e-172 609.0 436 69.5
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 5.2e-172 608.2 429 69.2
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.5e-171 606.7 423 70.2
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 5.7e-171 604.7 461 66.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.7e-171 604.7 424 69.6
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 9.8e-171 604.0 405 73.8
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.3e-170 603.6 431 69.6
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.3e-170 603.6 438 68.7
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 6.3e-170 601.3 438 67.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 6.3e-170 601.3 440 67.5
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.4e-169 599.4 433 68.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.0e-168 596.3 503 61.0
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 8.6e-167 590.9 481 63.0
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 7.3e-166 587.8 397 70.0
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.5e-163 580.1 438 66.2
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 8.3e-162 574.3 424 69.1
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.4e-161 572.8 442 64.9
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 5.2e-156 555.1 379 69.4
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 6.8e-156 554.7 451 61.6
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 2.6e-155 552.7 396 68.7
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 4.4e-155 552.0 338 78.4
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 6.4e-154 548.1 332 79.2
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.4e-153 545.0 435 63.4
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 3.3e-150 535.8 410 65.4
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 1.2e-149 533.9 422 64.2
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.2e-147 527.3 344 74.7
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 7.5e-147 524.6 390 64.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 5.1e-143 511.9 334 76.3
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.1e-140 504.2 442 59.5
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.5e-136 489.2 344 70.6
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.5e-136 489.2 409 62.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.0e-135 487.6 377 63.4
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.5e-134 483.8 437 55.6
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.2e-133 480.7 369 63.4
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.6e-133 479.2 418 59.6
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 3.1e-132 476.1 368 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.4e-129 467.2 418 57.2
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 7.1e-129 464.9 345 67.8
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 2.0e-123 446.8 332 63.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.4e-121 439.9 412 54.4
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 2.7e-120 436.4 447 52.3
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 3.3e-118 429.5 400 54.5
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 7.6e-115 418.3 312 66.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.8e-111 407.1 434 51.8
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-109 401.0 329 62.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 4.8e-109 399.1 368 59.2
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 9.3e-105 384.8 580 37.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.8e-101 373.2 286 64.0
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.8e-100 370.5 368 54.9
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.5e-99 367.5 270 66.3
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.1e-96 357.1 280 63.6
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 2.0e-91 340.5 270 61.1
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.6e-88 329.7 252 64.7
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.2e-82 310.5 434 42.4
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.2e-80 304.7 230 66.5
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 1.6e-80 304.3 202 69.8
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 2.1e-80 303.9 421 43.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.1e-80 302.4 351 48.7
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 6.1e-80 302.4 427 41.5
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 3.1e-76 290.0 151 94.0
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 5.3e-76 289.3 401 43.9
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.1e-68 265.0 469 36.7
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.4e-68 263.8 218 60.1
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 3.8e-66 256.5 233 55.4
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.1e-64 249.2 360 41.1
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.2e-62 245.0 153 75.8
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 5.7e-62 242.7 153 73.9
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.8e-60 237.7 153 73.9
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.5e-57 227.3 416 36.3
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 8.0e-56 222.2 406 35.5
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.2e-55 219.5 182 61.5
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 7.5e-54 215.7 139 73.4
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 9.8e-54 215.3 255 51.0
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.8e-52 211.1 139 71.2
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.0e-51 207.6 148 70.3
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 7.5e-46 189.1 125 71.2
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 2.4e-44 184.1 111 79.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-33 147.5 102 68.6
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.6e-32 143.7 105 66.7
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 1.2e-30 138.7 129 60.5
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 5.1e-26 123.2 100 62.0
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.9e-25 121.3 430 25.3
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.9e-21 106.7 62 77.4
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 3.9e-18 97.1 105 52.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 4.4e-14 83.6 327 26.3
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.3e-13 82.0 60 60.0
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.1e-12 79.0 44 72.7
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 2.3e-10 71.2 50 68.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-09 68.2 55 58.2
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 2.8e-08 64.3 52 55.8
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 3.6e-08 63.9 52 53.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 4.8e-08 63.5 52 53.8
SHI43370 Sapria himalayana HOM05D004598 ORTHO05D005550 4.0e-07 60.5 83 44.6


User provided reference genes

Program Settings