Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8522 Trifolium pratense HOM05D003235 ORTHO05D003863 2.4e-65 251.9 118 100.0
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 2.3e-36 155.6 120 65.8
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 3.1e-36 155.2 120 65.0
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 4.0e-36 154.8 120 65.0
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 64.2
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 6.8e-36 154.1 120 65.0
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 8.9e-36 153.7 120 64.2
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 8.9e-36 153.7 120 65.0
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 8.9e-36 153.7 120 64.2
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 8.9e-36 153.7 120 64.2
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 8.9e-36 153.7 120 65.0
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 1.2e-35 153.3 120 63.3
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 1.2e-35 153.3 120 63.3
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 1.5e-35 152.9 120 64.2
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 1.5e-35 152.9 120 65.0
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 1.5e-35 152.9 120 65.0
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 2.0e-35 152.5 120 63.3
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 2.0e-35 152.5 120 63.3
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.0e-35 152.5 120 62.5
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 2.0e-35 152.5 120 62.5
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 2.0e-35 152.5 120 63.3
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 62.5
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 63.3
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 62.5
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 61.7
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 2.6e-35 152.1 120 64.2
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 3.4e-35 151.8 120 63.3
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 3.4e-35 151.8 124 62.1
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 3.4e-35 151.8 120 61.7
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 3.4e-35 151.8 120 61.7
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 3.4e-35 151.8 120 63.3
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 3.4e-35 151.8 119 64.7
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 62.5
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 62.5
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 4.4e-35 151.4 120 63.3
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 5.8e-35 151.0 120 62.5
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 5.8e-35 151.0 120 62.5
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 7.6e-35 150.6 126 60.3
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 7.6e-35 150.6 120 63.3
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 7.6e-35 150.6 120 62.5
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 7.6e-35 150.6 120 61.7
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 7.6e-35 150.6 120 62.5
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 7.6e-35 150.6 120 63.3
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 9.9e-35 150.2 120 63.3
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 9.9e-35 150.2 120 62.5
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 9.9e-35 150.2 120 63.3
vmacro20801 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 9.9e-35 150.2 120 63.3
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 61.7
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 62.5
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 63.3
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 63.3
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 63.3
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 1.3e-34 149.8 120 62.5
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 1.7e-34 149.4 120 62.5
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 2.2e-34 149.1 120 62.5
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 2.2e-34 149.1 120 62.5
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 2.2e-34 149.1 120 62.5
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 2.2e-34 149.1 120 62.5
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.2e-34 149.1 120 61.7
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 60.8
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 61.7
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 60.8
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 60.8
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 63.3
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 62.5
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 61.7
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 62.5
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 62.5
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 2.9e-34 148.7 120 62.5
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 61.7
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 62.5
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 60.8
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 61.7
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 61.7
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 60.8
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 61.7
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 3.8e-34 148.3 120 63.3
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 4.9e-34 147.9 120 62.5
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 4.9e-34 147.9 120 62.5
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 6.4e-34 147.5 119 63.0
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 6.4e-34 147.5 120 62.5
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 6.4e-34 147.5 120 60.8
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 60.8
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 61.7
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 60.0
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 60.0
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 8.4e-34 147.1 120 60.0
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.1e-33 146.7 120 60.0
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.1e-33 146.7 120 60.8
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 1.1e-33 146.7 120 62.5
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 1.1e-33 146.7 120 62.5
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 1.1e-33 146.7 120 62.5
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 1.4e-33 146.4 120 61.7
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 1.4e-33 146.4 120 61.7
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 1.4e-33 146.4 120 60.8
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 1.9e-33 146.0 120 59.2
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 1.9e-33 146.0 120 62.5
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 2.4e-33 145.6 120 60.0
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.4e-33 145.6 156 50.6
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 3.2e-33 145.2 121 60.3
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 3.2e-33 145.2 121 60.3
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 3.2e-33 145.2 120 61.7
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 4.1e-33 144.8 120 61.7
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 4.1e-33 144.8 127 59.1
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 4.1e-33 144.8 120 62.5
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 5.4e-33 144.4 120 61.7
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 5.4e-33 144.4 120 61.7
SEGI_35719 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 5.4e-33 144.4 126 57.1
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 7.1e-33 144.1 120 61.7
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 9.2e-33 143.7 126 57.1
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 9.2e-33 143.7 120 60.0
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 1.2e-32 143.3 118 61.0
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.1e-32 142.5 118 61.9
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.7e-32 142.1 120 60.8
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 2.7e-32 142.1 120 59.2
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 1.3e-31 139.8 120 60.8
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 2.3e-31 139.0 120 56.7
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 3.0e-31 138.7 120 60.0
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 8.6e-31 137.1 120 58.3
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 1.5e-30 136.3 120 56.7
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 7.3e-30 134.0 166 47.0
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 2.8e-29 132.1 120 56.7
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 4.7e-29 131.3 120 54.2
SEGI_03808 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 8.9e-28 127.1 124 54.8
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 1.5e-27 126.3 120 54.2
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 2.0e-27 125.9 120 52.5
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 2.9e-26 122.1 117 58.1
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 4.2e-25 118.2 120 52.5
VMungo0251G3552 Vigna mungo HOM05D003235 ORTHO05D003863 9.3e-25 117.1 94 59.6
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 3.5e-24 115.2 121 48.8
RhsimUnG0171100 Rhododendron simsii HOM05D003235 ORTHO05D003863 3.5e-24 115.2 95 60.0
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 2.3e-23 112.5 120 50.0
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 2.3e-23 112.5 106 55.7
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 1.9e-22 109.4 106 55.7
vmacro02323 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 9.6e-22 107.1 107 53.3
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 2.1e-21 105.9 120 45.0
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 1.8e-20 102.8 128 46.1
EL10Ac3g05833 Beta vulgaris HOM05D003235 ORTHO05D003863 3.4e-19 98.6 91 52.7
HPP92_011716 Vanilla planifolia HOM05D003235 ORTHO05D003863 3.4e-19 98.6 64 70.3
RcHm_v2.0_Chr4g0414791 Rosa chinensis HOM05D003235 ORTHO05D003863 5.8e-19 97.8 95 53.7
ECA236G2309 Erigeron canadensis HOM05D003235 ORTHO05D000512 8.4e-18 94.0 79 57.0
Sc14g0002390 Simmondsia chinensis HOM05D003235 ORTHO05D003863 8.4e-18 94.0 78 59.0
Nitab4.5_0006796g0050 Nicotiana tabacum HOM05D003235 ORTHO05D003863 2.4e-17 92.4 94 48.9
Pp3c14_5980 Physcomitrium patens HOM05D003235 ORTHO05D003863 1.3e-15 86.7 66 59.1
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 1.1e-14 83.6 94 47.9
TPR.G40684 Trifolium pratense HOM05D003235 ORTHO05D003863 1.9e-14 82.8 59 69.5
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 8.1e-13 77.4 80 50.0
arahy.Tifrunner.gnm1.ann1.W5AITF Arachis hypogaea HOM05D003235 ORTHO05D003863 2.0e-11 72.8 78 47.4
BraA10t43862Z Brassica rapa HOM05D003235 ORTHO05D003863 1.3e-10 70.1 31 93.5
MBI18_g41996_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 2.2e-10 69.3 31 93.5
MBI02_g46599_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 6.4e-10 67.8 29 96.6
CBR_g30645 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-09 66.6 28 100.0
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.4e-09 66.6 29 89.7
PGSC0003DMG400018636 Solanum tuberosum HOM05D003235 ORTHO05D003863 2.4e-09 65.9 29 93.1
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 9.3e-09 63.9 94 40.4
Sabra04G0123300 Salix brachista HOM05D003235 ORTHO05D003863 1.8e-07 59.7 32 81.2
HPP92_011715 Vanilla planifolia HOM05D003235 ORTHO05D003863 5.1e-07 58.2 40 67.5
Zm00001eb323170 Zea mays HOM05D003235 ORTHO05D003863 5.1e-07 58.2 40 67.5
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 1.5e-06 56.6 40 67.5


User provided reference genes

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