Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 2.9e-232 808.1 399 100.0
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 4.3e-183 644.8 394 82.0
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 6.0e-177 624.4 392 82.7
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 3.0e-176 622.1 394 80.7
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 1.8e-157 559.7 345 82.0
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 6.9e-157 557.8 393 72.8
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 4.4e-143 511.9 395 67.3
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 9.1e-141 504.2 374 69.8
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 2.2e-139 499.6 394 65.0
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 1.5e-138 496.9 389 65.6
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 1.8e-133 479.9 400 62.5
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 2.7e-132 476.1 400 62.0
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 4.6e-108 395.6 401 51.6
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 1.0e-107 394.4 401 51.6
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 2.0e-103 380.2 394 52.0
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 3.4e-103 379.4 396 51.3
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.5e-100 369.4 394 51.3
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.7e-99 367.1 397 50.1
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 6.6e-99 365.2 400 49.0
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 6.2e-97 358.6 404 47.8
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 3.1e-96 356.3 400 48.8
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 3.4e-95 352.8 404 48.0
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 3.4e-95 352.8 403 48.1
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 7.6e-95 351.7 398 48.7
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 1.6e-92 344.0 409 46.9
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 1.6e-92 344.0 424 45.8
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 3.5e-92 342.8 396 48.2
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 7.8e-92 341.7 403 46.7
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.0e-91 341.3 402 46.3
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 1.1e-90 337.8 392 47.4
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 7.3e-90 335.1 393 46.1
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 1.6e-89 334.0 405 47.2
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 2.8e-89 333.2 397 45.8
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 1.1e-88 331.3 389 47.8
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 2.6e-87 326.6 412 45.9
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 1.7e-86 323.9 380 46.6
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 3.8e-86 322.8 395 45.8
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 1.1e-85 321.2 392 46.7
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 4.2e-85 319.3 402 44.5
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 9.3e-85 318.2 394 45.9
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 5.1e-83 312.4 399 43.4
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 1.3e-81 307.8 365 48.2
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 6.9e-80 302.0 393 44.3
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 1.5e-79 300.8 395 41.5
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 2.6e-79 300.1 386 43.0
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.1e-77 294.7 391 42.7
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 3.2e-77 293.1 390 41.8
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.6e-76 290.8 389 41.6
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 4.6e-76 289.3 396 40.4
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 1.7e-75 287.3 338 46.4
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 2.5e-74 283.5 363 44.4
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 2.1e-73 280.4 395 41.3
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 2.8e-73 280.0 379 42.2
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 5.3e-72 275.8 400 39.8
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 9.9e-71 271.6 397 40.1
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 1.3e-70 271.2 407 41.8
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 1.3e-70 271.2 400 40.5
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 1.7e-70 270.8 418 38.0
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 8.4e-70 268.5 468 35.7
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 5.8e-63 245.7 274 49.3
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 1.3e-59 234.6 403 35.0
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 8.7e-59 231.9 379 39.8
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 3.8e-54 216.5 393 35.4
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 4.2e-53 213.0 333 40.5
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 4.3e-50 203.0 423 33.3
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 1.4e-48 198.0 214 49.1
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 2.0e-47 194.1 420 34.5
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 1.1e-45 188.3 264 42.0
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 2.5e-45 187.2 331 36.6
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.2e-44 184.9 219 45.7
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.3e-41 174.9 214 45.3
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 5.9e-39 166.0 217 40.1
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 4.4e-34 149.8 318 32.7
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.2e-33 147.5 162 46.9
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 2.4e-24 117.5 268 32.5
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 1.9e-21 107.8 125 41.6
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 2.6e-18 97.4 137 40.9
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 3.4e-18 97.1 157 38.9
SEGI_24688 Sequoiadendron giganteum HOM05D003443 ORTHO05D009887 4.0e-11 73.6 179 29.1
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 9.2e-08 62.4 48 58.3
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 1.7e-06 58.2 37 67.6
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 6.6e-06 56.2 43 55.8


User provided reference genes

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