Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8499 Trifolium pratense HOM05D028375 ORTHO05D008640 0.0e+00 1807.7 955 100.0
TPR.G21107 Trifolium pratense HOM05D028375 ORTHO05D026205 3.6e-268 928.7 635 76.9
TPR.G34485 Trifolium pratense HOM05D009527 ORTHO05D013850 9.1e-62 243.0 229 59.0
TPR.G8928 Trifolium pratense HOM05D026048 ORTHO05D026205 1.1e-59 236.1 214 59.3
TPR.G27263 Trifolium pratense HOM05D009527 ORTHO05D013850 8.2e-55 219.9 118 88.1
Psat2g087720 Pisum sativum HOM05D003443 ORTHO05D008640 1.1e-35 156.4 126 68.3
TPR.G36084 Trifolium pratense HOM05D009527 ORTHO05D013850 2.1e-34 152.1 164 51.2
TPR.G34991 Trifolium pratense HOM05D009527 ORTHO05D013850 3.6e-34 151.4 128 58.6
TPR.G18519 Trifolium pratense HOM05D009527 ORTHO05D013850 5.2e-33 147.5 89 76.4
TPR.G18252 Trifolium pratense HOM05D002500 ORTHO05D002587 1.3e-31 142.9 88 79.5
Medtr5g058660 Medicago truncatula HOM05D003443 ORTHO05D008640 2.8e-31 141.7 127 65.4
Medtr5g059030 Medicago truncatula HOM05D003443 ORTHO05D008640 2.8e-31 141.7 127 65.4
Ca_26970_v3 Cicer arietinum L. HOM05D003443 ORTHO05D008640 9.1e-30 136.7 128 61.7
TPR.G26515 Trifolium pratense HOM05D009527 ORTHO05D013850 4.5e-29 134.4 121 54.5
Medtr4g078180 Medicago truncatula HOM05D009527 ORTHO05D013850 4.2e-27 127.9 147 46.3
Medtr6g007360 Medicago truncatula HOM05D009527 ORTHO05D013850 4.2e-27 127.9 212 39.2
Medtr1g115165 Medicago truncatula HOM05D009527 ORTHO05D013850 7.2e-27 127.1 212 39.2
Lj1g0013808 Lotus japonicus HOM05D003443 ORTHO05D008640 2.0e-24 119.0 126 65.9
Ca_27173_v3 Cicer arietinum L. HOM05D009527 ORTHO05D013850 9.8e-24 116.7 105 55.2
Lalb_Chr10g0101911 Lupinus albus HOM05D003443 ORTHO05D008640 9.8e-24 116.7 127 52.8
Glyma.14G162600 Glycine max HOM05D003443 ORTHO05D008640 3.7e-23 114.8 135 49.6
VMungo0647G0179 Vigna mungo HOM05D003443 ORTHO05D008640 4.9e-23 114.4 126 53.2
MD03G1200300 Malus domestica HOM05D003443 ORTHO05D008640 8.3e-23 113.6 130 51.5
MD15G1353300 Malus domestica HOM05D003443 ORTHO05D008640 8.3e-23 113.6 130 51.5
CiPaw.05G224500 Carya illinoinensis HOM05D003443 ORTHO05D008640 1.1e-22 113.2 126 52.4
Cpa.g.sc70.11 Carica papaya HOM05D003443 ORTHO05D008640 1.4e-22 112.8 128 52.3
arahy.Tifrunner.gnm1.ann1.ZIXY5S Arachis hypogaea HOM05D003443 ORTHO05D008640 1.8e-22 112.5 119 55.5
CANSAT25G1680 Cannabis sativa HOM05D003443 ORTHO05D008640 1.8e-22 112.5 127 50.4
Prupe.1G501600 Prunus persica HOM05D003443 ORTHO05D008640 1.8e-22 112.5 126 52.4
Atru.chr13.1408 Acer truncatum HOM05D003443 ORTHO05D008640 2.4e-22 112.1 127 52.0
arahy.Tifrunner.gnm1.ann1.B00VWE Arachis hypogaea HOM05D003443 ORTHO05D008640 2.4e-22 112.1 126 53.2
FvH4_2g26530 Fragaria vesca HOM05D003443 ORTHO05D008640 5.4e-22 110.9 127 52.0
RcHm_v2.0_Chr6g0295401 Rosa chinensis HOM05D003443 ORTHO05D008640 7.0e-22 110.5 127 50.4
Manes.18G075200 Manihot esculenta HOM05D003443 ORTHO05D008640 1.2e-21 109.8 126 50.0
Nitab4.5_0002883g0010 Nicotiana tabacum HOM05D003443 ORTHO05D008640 1.2e-21 109.8 126 50.8
FAN24G2127 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.6e-21 109.4 127 51.2
Solyc11g013020.2 Solanum lycopersicum HOM05D003443 ORTHO05D008640 1.6e-21 109.4 127 50.4
PGSC0003DMG400000906 Solanum tuberosum HOM05D003443 ORTHO05D008640 1.6e-21 109.4 126 50.8
Sopen11g007760 Solanum pennellii HOM05D003443 ORTHO05D008640 2.0e-21 109.0 127 50.4
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 3.5e-21 108.2 126 50.0
Ciclev10002759m.g Citrus clementina HOM05D003443 ORTHO05D008640 3.5e-21 108.2 126 52.4
PSO170G0931 Papaver somniferum HOM05D003443 ORTHO05D008640 3.5e-21 108.2 128 50.8
Sabra02G0067600 Salix brachista HOM05D003443 ORTHO05D008640 3.5e-21 108.2 126 50.0
Dinv40389 Davidia involucrata HOM05D003443 ORTHO05D008640 4.5e-21 107.8 126 50.0
Nn4g26023 Nelumbo nucifera HOM05D003443 ORTHO05D008640 7.8e-21 107.1 126 50.0
Thecc.08G121300 Theobroma cacao HOM05D003443 ORTHO05D008640 7.8e-21 107.1 132 48.5
AUR62004720 Chenopodium quinoa HOM05D003443 ORTHO05D008640 1.0e-20 106.7 131 48.9
Gohir.A05G233400 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.0e-20 106.7 126 50.0
Gohir.D05G235800 Gossypium hirsutum HOM05D003443 ORTHO05D008640 1.0e-20 106.7 126 50.0
Gorai.009G244100 Gossypium raimondii HOM05D003443 ORTHO05D008640 1.0e-20 106.7 126 50.0
CsaV3_6G003590 Cucumis sativus L. HOM05D003443 ORTHO05D008640 1.3e-20 106.3 134 47.8
FAN15G0021 Fragaria x ananassa HOM05D003443 ORTHO05D008640 1.3e-20 106.3 126 49.2
CAN.G513.1 Capsicum annuum HOM05D003443 ORTHO05D008640 1.7e-20 105.9 123 50.4
QL08p024382 Quercus lobata HOM05D003443 ORTHO05D008640 1.7e-20 105.9 126 48.4
GSVIVG01008902001 Vitis vinifera HOM05D003443 ORTHO05D008640 2.9e-20 105.1 128 49.2
MELO3C011587.2 Cucumis melo HOM05D003443 ORTHO05D008640 3.8e-20 104.8 134 47.0
DCAR_014106 Daucus carota HOM05D003443 ORTHO05D008640 6.6e-20 104.0 129 48.8
FAN27G2419 Fragaria x ananassa HOM05D003443 ORTHO05D008640 6.6e-20 104.0 126 48.4
Sc01g0001350 Simmondsia chinensis HOM05D003443 ORTHO05D008640 6.6e-20 104.0 126 46.8
Peaxi162Scf00395g00717 Petunia axillaris HOM05D003443 ORTHO05D008640 8.6e-20 103.6 134 44.0
CSS0034050 Camellia sinensis var. sinensis HOM05D003443 ORTHO05D008640 1.5e-19 102.8 133 48.9
Haze_00480 Corylus avellana HOM05D003443 ORTHO05D008640 1.5e-19 102.8 126 46.8
Nitab4.5_0001926g0050 Nicotiana tabacum HOM05D003443 ORTHO05D008640 1.5e-19 102.8 126 48.4
Peaxi162Scf00198g00098 Petunia axillaris HOM05D003443 ORTHO05D008640 1.5e-19 102.8 134 44.0
Potri.002G086200 Populus trichocarpa HOM05D003443 ORTHO05D008640 2.5e-19 102.1 126 47.6
vmacro12548 Vaccinium macrocarpon HOM05D003443 ORTHO05D008640 3.3e-19 101.7 126 57.1
Sed0028054 Sechium edule HOM05D003443 ORTHO05D008640 4.3e-19 101.3 132 47.0
Cc10_g11000 Coffea canephora HOM05D003443 ORTHO05D008640 5.6e-19 100.9 161 39.8
AT4G08240 Arabidopsis thaliana HOM05D003443 ORTHO05D008640 7.3e-19 100.5 126 46.8
SGA_v2.0_scaffold52G18981 Striga asiatica HOM05D003443 ORTHO05D008640 7.3e-19 100.5 126 46.0
Hma1.2p1_0073F.1_g038390 Hydrangea macrophylla HOM05D003443 ORTHO05D008640 9.5e-19 100.1 118 60.2
Actinidia02607 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.2e-18 99.8 126 51.6
Actinidia23064 Actinidia chinensis HOM05D003443 ORTHO05D008640 1.2e-18 99.8 121 49.6
AL6G41970 Arabidopsis lyrata HOM05D003443 ORTHO05D008640 1.2e-18 99.8 126 46.8
Aqoxy6G00163 Aquilegia oxysepala HOM05D003443 ORTHO05D008640 1.6e-18 99.4 128 52.3
Rhsim06G0105400 Rhododendron simsii HOM05D003443 ORTHO05D008640 1.6e-18 99.4 130 56.9
HanXRQChr09g0254131 Helianthus annuus HOM05D003443 ORTHO05D008640 2.8e-18 98.6 134 42.5
Medtr3g022250 Medicago truncatula HOM05D009527 ORTHO05D013850 4.7e-18 97.8 95 49.5
MBI06_g44272_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 6.1e-18 97.4 130 46.2
MBI15_g35999_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D008640 6.1e-18 97.4 130 46.2
SalBow7G4791 Salvia bowleyana HOM05D003443 ORTHO05D008640 6.1e-18 97.4 127 44.1
THA.LOC104817138 Tarenaya hassleriana HOM05D003443 ORTHO05D008640 6.1e-18 97.4 126 45.2
SalBow7G2413 Salvia bowleyana HOM05D003443 ORTHO05D008640 1.0e-17 96.7 128 43.0
Carub.0006s2677 Capsella rubella HOM05D003443 ORTHO05D008640 1.4e-17 96.3 132 43.2
MELO3C011304.2 Cucumis melo HOM05D003443 ORTHO05D008640 1.8e-17 95.9 146 43.2
CARHR259340 Cardamine hirsuta HOM05D003443 ORTHO05D008640 2.3e-17 95.5 126 46.0
Migut.C01148 Erythranthe guttata HOM05D003443 ORTHO05D008640 3.0e-17 95.1 126 45.2
Aa31LG9G14320 Aethionema arabicum HOM05D003443 ORTHO05D008640 5.2e-17 94.4 127 44.9
CDE06G0537 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 5.2e-17 94.4 140 38.6
BcaB01g02870 Brassica carinata HOM05D003443 ORTHO05D008640 6.8e-17 94.0 126 45.2
Ca_25152_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 6.8e-17 94.0 112 41.1
Thhalv10029053m.g Eutrema salsugineum HOM05D003443 ORTHO05D008640 1.2e-16 93.2 126 46.0
Sp6g09810 Schrenkiella parvula HOM05D003443 ORTHO05D008640 1.2e-16 93.2 126 43.7
CDE08G0113 Ceratophyllum demersum HOM05D003443 ORTHO05D008640 2.0e-16 92.4 128 39.1
MSTRG.1460 Avicennia marina HOM05D003443 ORTHO05D008640 3.4e-16 91.7 126 42.1
HPP92_002301 Vanilla planifolia HOM05D003443 ORTHO05D008640 9.8e-16 90.1 127 42.5
Medtr7g446320 Medicago truncatula HOM05D009527 ORTHO05D013850 1.3e-15 89.7 180 36.7
ATR0121G005 Amborella trichopoda HOM05D003443 ORTHO05D008640 2.9e-15 88.6 123 42.3
BcaC01g04776 Brassica carinata HOM05D003443 ORTHO05D008640 4.9e-15 87.8 126 43.7
C03p33840 Brassica napus HOM05D003443 ORTHO05D008640 4.9e-15 87.8 126 43.7
BolC3t15700H Brassica oleracea HOM05D003443 ORTHO05D008640 4.9e-15 87.8 126 43.7
ECA232G0443 Erigeron canadensis HOM05D003443 ORTHO05D008640 4.9e-15 87.8 124 42.7
BraA03t12014Z Brassica rapa HOM05D003443 ORTHO05D008640 6.4e-15 87.4 126 43.7
Lsat_1_v5_gn_4_136221 Lactuca sativa HOM05D003443 ORTHO05D008640 2.4e-14 85.5 122 43.4
TPR.G38395 Trifolium pratense HOM05D009527 ORTHO05D013850 2.4e-14 85.5 74 50.0
MD08G1167900 Malus domestica HOM05D003443 ORTHO05D008640 3.2e-14 85.1 119 44.5
A03p27990 Brassica napus HOM05D003443 ORTHO05D008640 5.4e-14 84.3 126 42.1
Phvul.008G165400 Phaseolus vulgaris HOM05D003443 ORTHO05D008640 7.0e-14 84.0 100 51.0
Hund27039 Selenicereus undatus HOM05D003443 ORTHO05D008640 3.5e-13 81.6 193 33.7
AUR62023639 Chenopodium quinoa HOM05D003443 ORTHO05D008640 2.3e-12 79.0 124 40.3
SEGI_04119 Sequoiadendron giganteum HOM05D003443 ORTHO05D008640 3.0e-12 78.6 125 36.8
TAR628G1666 Trochodendron aralioides HOM05D003443 ORTHO05D008640 8.6e-12 77.0 58 63.8
Ca_12972_v3 Cicer arietinum L. HOM05D003122 ORTHO05D010195 1.1e-11 76.6 83 41.0
PGR044G0044 Punica granatum HOM05D003443 ORTHO05D008640 1.1e-11 76.6 117 43.6
Os02g0567000 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D008640 1.9e-11 75.9 127 39.4
Zm00001eb244530 Zea mays HOM05D003443 ORTHO05D008640 1.9e-11 75.9 127 37.8
Ca_16686_v3 Cicer arietinum L. HOM05D009527 ORTHO05D013850 2.5e-11 75.5 96 38.5
ClCG08G005410 Citrullus lanatus HOM05D003443 ORTHO05D008640 5.6e-11 74.3 195 31.8
VMungo0251G0994 Vigna mungo HOM05D002797 ORTHO05D010195 5.6e-11 74.3 94 39.4
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 2.8e-10 72.0 94 38.3
Ca_12114_v3 Cicer arietinum L. HOM05D003122 ORTHO05D010195 3.6e-10 71.6 119 31.1
unitig_747.g21488 Utricularia gibba HOM05D003443 ORTHO05D008640 4.7e-10 71.2 128 35.9
VMungo0251G2087 Vigna mungo HOM05D009527 ORTHO05D010195 1.1e-09 70.1 83 42.2
Ah.16g110170 Amaranthus hybridus HOM05D003443 ORTHO05D008640 1.4e-09 69.7 55 61.8
VMungo1080G1902 Vigna mungo HOM05D000054 ORTHO05D010195 1.8e-09 69.3 132 35.6
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 3.1e-09 68.6 133 34.6
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.2e-08 66.6 92 34.8
VMungo0464G0549 Vigna mungo HOM05D001615 ORTHO05D001493 1.2e-08 66.6 105 40.0
Eucgr.L01689 Eucalyptus grandis HOM05D003443 ORTHO05D008640 1.5e-08 66.2 55 61.8
VMungo0331G1449 Vigna mungo HOM05D009527 ORTHO05D010195 2.0e-08 65.9 89 36.0
VMungo0647G0580 Vigna mungo HOM05D000660 ORTHO05D010195 2.0e-08 65.9 89 34.8
VMungo0720G0378 Vigna mungo HOM05D012939 ORTHO05D010195 2.0e-08 65.9 84 36.9
Psat0s1287g0080 Pisum sativum HOM05D000004 ORTHO05D000002 2.6e-08 65.5 110 34.5
TPR.G6695 Trifolium pratense HOM05D000004 ORTHO05D000002 2.6e-08 65.5 90 37.8
VMungo1127G0760 Vigna mungo HOM05D012939 ORTHO05D010195 2.6e-08 65.5 82 34.1
VMungo0647G0036 Vigna mungo HOM05D001600 ORTHO05D001502 4.4e-08 64.7 102 33.3
VMungo1309G2709 Vigna mungo HOM05D000618 ORTHO05D010195 4.4e-08 64.7 89 34.8
Medtr5g094775 Medicago truncatula HOM05D009527 ORTHO05D013850 5.8e-08 64.3 102 39.2
VMungo0251G0341 Vigna mungo HOM05D000660 ORTHO05D010195 5.8e-08 64.3 72 36.1
VMungo1127G2266 Vigna mungo HOM05D009527 ORTHO05D010195 5.8e-08 64.3 87 35.6
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 7.5e-08 63.9 77 37.7
VMungo1383G1247 Vigna mungo HOM05D000402 ORTHO05D010195 2.2e-07 62.4 107 34.6
Psat5g016360 Pisum sativum HOM05D000004 ORTHO05D000002 2.9e-07 62.0 110 33.6
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 3.7e-07 61.6 173 26.0
VMungo1080G1583 Vigna mungo HOM05D001060 ORTHO05D010195 3.7e-07 61.6 122 27.9
VMungo0720G2098 Vigna mungo HOM05D004618 ORTHO05D005318 4.9e-07 61.2 77 35.1
VMungo1383G1168 Vigna mungo HOM05D000140 ORTHO05D010195 6.4e-07 60.8 164 25.0
VMungo1127G0474 Vigna mungo HOM05D009527 ORTHO05D010195 8.3e-07 60.5 74 35.1
Oeu047933.1 Olea europaea HOM05D003443 ORTHO05D008640 1.1e-06 60.1 59 50.8
VMungo0720G1249 Vigna mungo HOM05D000002 ORTHO05D000047 1.4e-06 59.7 150 25.3
Psat4g137240 Pisum sativum HOM05D000004 ORTHO05D000002 1.9e-06 59.3 90 33.3
VMungo0464G1208 Vigna mungo HOM05D000004 ORTHO05D000002 2.4e-06 58.9 94 33.0
VMungo1309G2161 Vigna mungo HOM05D012939 ORTHO05D010195 2.4e-06 58.9 102 35.3
Ca_12309_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.2e-06 58.5 91 31.9
Ca_19490_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 3.2e-06 58.5 93 34.4
TPR.G17488 Trifolium pratense HOM05D000004 ORTHO05D000002 3.2e-06 58.5 84 33.3
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 3.2e-06 58.5 88 34.1
TWI12G0841 Tripterygium wilfordii HOM05D003443 ORTHO05D008640 3.2e-06 58.5 55 54.5
VMungo0647G1598 Vigna mungo HOM05D002051 ORTHO05D002041 3.2e-06 58.5 157 26.8
VMungo0720G2490 Vigna mungo HOM05D012939 ORTHO05D010195 3.2e-06 58.5 73 37.0
VMungo1080G0003 Vigna mungo HOM05D005948 ORTHO05D007689 3.2e-06 58.5 79 34.2
CSS0005910 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.1e-06 58.2 172 26.7
Psat1g213840 Pisum sativum HOM05D000004 ORTHO05D000002 4.1e-06 58.2 90 32.2
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 4.1e-06 58.2 86 34.9
VMungo0540G2200 Vigna mungo HOM05D009527 ORTHO05D010195 4.1e-06 58.2 72 30.6
Ca_16129_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 5.4e-06 57.8 95 33.7
Lalb_Chr24g0402721 Lupinus albus HOM05D000004 ORTHO05D000002 5.4e-06 57.8 117 29.1
TPR.G31865 Trifolium pratense HOM05D000004 ORTHO05D000002 5.4e-06 57.8 90 36.7
Duzib093G0610 Durio zibethinus HOM05D003443 ORTHO05D008640 7.0e-06 57.4 126 47.6
FvH4_7g29722 Fragaria vesca HOM05D000004 ORTHO05D000002 7.0e-06 57.4 91 31.9
Mapoly0161s0025 Marchantia polymorpha HOM05D003443 ORTHO05D008640 7.0e-06 57.4 130 28.5
Psat3g172640 Pisum sativum HOM05D000028 ORTHO05D000390 7.0e-06 57.4 95 32.6
Ca_20427_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 9.2e-06 57.0 104 31.7
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 9.2e-06 57.0 91 31.9
Psat5g213280 Pisum sativum HOM05D000004 ORTHO05D000002 9.2e-06 57.0 84 32.1


User provided reference genes

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