Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8479 Trifolium pratense HOM05D000473 ORTHO05D001433 2.5e-40 168.3 84 100.0
Medtr3g435930 Medicago truncatula HOM05D000473 ORTHO05D001433 1.7e-25 119.0 97 63.9
TPR.G19872 Trifolium pratense HOM05D000473 ORTHO05D001433 1.8e-22 109.0 99 59.6
Psat0s1933g0160 Pisum sativum HOM05D000473 ORTHO05D001433 4.4e-21 104.4 97 57.7
arahy.Tifrunner.gnm1.ann1.993USZ Arachis hypogaea HOM05D000473 ORTHO05D001433 1.9e-19 99.0 97 52.6
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 1.9e-19 99.0 97 53.6
arahy.Tifrunner.gnm1.ann1.GEN90L Arachis hypogaea HOM05D000473 ORTHO05D001433 2.4e-19 98.6 97 51.5
Glyma.15G085100 Glycine max HOM05D000473 ORTHO05D001433 1.0e-17 93.2 96 46.9
Lalb_Chr20g0117561 Lupinus albus HOM05D000473 ORTHO05D001433 1.7e-17 92.4 97 48.5
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 8.9e-14 80.1 90 44.4
Phvul.006G173800 Phaseolus vulgaris HOM05D000473 ORTHO05D001433 2.2e-12 75.5 97 37.1
Duzib251G0269 Durio zibethinus HOM05D000473 ORTHO05D001433 1.1e-11 73.2 97 39.2
Manes.13G008700 Manihot esculenta HOM05D000473 ORTHO05D001433 2.4e-11 72.0 98 39.8
Potri.016G017600 Populus trichocarpa HOM05D000473 ORTHO05D001433 2.4e-11 72.0 97 40.2
TWI32G0390 Tripterygium wilfordii HOM05D000473 ORTHO05D001433 4.1e-11 71.2 98 35.7
Sabra16G0019900 Salix brachista HOM05D000473 ORTHO05D001433 7.1e-11 70.5 98 39.8
TWI18G1249 Tripterygium wilfordii HOM05D000473 ORTHO05D001433 9.2e-11 70.1 100 36.0
Ciclev10033647m.g Citrus clementina HOM05D000473 ORTHO05D001433 1.6e-10 69.3 97 36.1
Thecc.02G201400 Theobroma cacao HOM05D000473 ORTHO05D001433 2.1e-10 68.9 97 35.1
Prupe.1G222400 Prunus persica HOM05D000473 ORTHO05D001433 1.0e-09 66.6 95 37.9
Gohir.D05G310800 Gossypium hirsutum HOM05D000473 ORTHO05D001433 2.3e-09 65.5 99 35.4
THA.LOC104824659 Tarenaya hassleriana HOM05D000473 ORTHO05D001433 2.3e-09 65.5 97 33.0
Sp3g02020 Schrenkiella parvula HOM05D000473 ORTHO05D001433 3.0e-09 65.1 99 34.3
Dinv17590 Davidia involucrata HOM05D000473 ORTHO05D001433 3.9e-09 64.7 94 37.2
GSVIVG01000907001 Vitis vinifera HOM05D000473 ORTHO05D001433 5.1e-09 64.3 97 36.1
Migut.K01006 Erythranthe guttata HOM05D000473 ORTHO05D001433 6.6e-09 63.9 94 39.4
Carub.0003s0209 Capsella rubella HOM05D000473 ORTHO05D001433 8.7e-09 63.5 99 33.3
CAN.G65.123 Capsicum annuum HOM05D000473 ORTHO05D001433 8.7e-09 63.5 87 39.1
Thhalv10022005m.g Eutrema salsugineum HOM05D000473 ORTHO05D001433 8.7e-09 63.5 99 32.3
FvH4_2g00760 Fragaria vesca HOM05D000473 ORTHO05D001433 8.7e-09 63.5 99 35.4
FAN24G0355 Fragaria x ananassa HOM05D000473 ORTHO05D001433 8.7e-09 63.5 99 35.4
Prupe.8G006700 Prunus persica HOM05D000473 ORTHO05D001433 8.7e-09 63.5 99 35.4
SalBow6G1959 Salvia bowleyana HOM05D000473 ORTHO05D001433 8.7e-09 63.5 95 38.9
Gorai.009G331700 Gossypium raimondii HOM05D000473 ORTHO05D001433 1.5e-08 62.8 99 34.3
MELO3C022329.2 Cucumis melo HOM05D000473 ORTHO05D001433 1.9e-08 62.4 93 35.5
CsaV3_6G008070 Cucumis sativus L. HOM05D000473 ORTHO05D001433 1.9e-08 62.4 93 34.4
Sed0009950 Sechium edule HOM05D000473 ORTHO05D001433 1.9e-08 62.4 98 32.7
C05p63820 Brassica napus HOM05D000473 ORTHO05D001433 2.5e-08 62.0 99 32.3
CSS0000193 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D001433 2.5e-08 62.0 96 36.5
FAN27G3217 Fragaria x ananassa HOM05D000473 ORTHO05D001433 2.5e-08 62.0 99 33.3
Gohir.A05G309950 Gossypium hirsutum HOM05D000473 ORTHO05D001433 2.5e-08 62.0 97 34.0
MD10G1004300 Malus domestica HOM05D000473 ORTHO05D001433 2.5e-08 62.0 99 36.4
Solyc05g009440.2 Solanum lycopersicum HOM05D000473 ORTHO05D001433 2.5e-08 62.0 93 36.6
A05p44160 Brassica napus HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
C05p63800 Brassica napus HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
C05p63810 Brassica napus HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
C05p63840 Brassica napus HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
BolC5t35049H Brassica oleracea HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
BraSC90t46694Z Brassica rapa HOM05D000473 ORTHO05D001433 3.3e-08 61.6 99 32.3
QL03p051603 Quercus lobata HOM05D000473 ORTHO05D001433 3.3e-08 61.6 98 35.7
AT3G02960 Arabidopsis thaliana HOM05D000473 ORTHO05D001433 4.3e-08 61.2 98 30.6
CAN.G610.72 Capsicum annuum HOM05D000473 ORTHO05D001433 4.3e-08 61.2 92 38.0
Lj3A1073T43 Lonicera japonica HOM05D000473 ORTHO05D001433 4.3e-08 61.2 98 38.8
Peaxi162Scf00753g00438 Petunia axillaris HOM05D000473 ORTHO05D001433 4.3e-08 61.2 93 38.7
Aa31LG5G13460 Aethionema arabicum HOM05D000473 ORTHO05D001433 7.3e-08 60.5 99 32.3
RcHm_v2.0_Chr6g0251141 Rosa chinensis HOM05D000473 ORTHO05D001433 7.3e-08 60.5 99 33.3
AL3G12420 Arabidopsis lyrata HOM05D000473 ORTHO05D001433 9.6e-08 60.1 99 31.3
MD05G1003300 Malus domestica HOM05D000473 ORTHO05D001433 9.6e-08 60.1 99 34.3
CiPaw.06G105400 Carya illinoinensis HOM05D000473 ORTHO05D001433 1.2e-07 59.7 95 35.8
Glyma.05G203700 Glycine max HOM05D000473 ORTHO05D001433 1.2e-07 59.7 107 34.6
Peaxi162Scf00815g00353 Petunia axillaris HOM05D000473 ORTHO05D001433 1.6e-07 59.3 94 36.2
Rhsim12G0023700 Rhododendron simsii HOM05D000473 ORTHO05D001433 2.1e-07 58.9 96 34.4
VMungo0251G3072 Vigna mungo HOM05D000473 ORTHO05D001433 2.1e-07 58.9 104 33.7
PGSC0003DMG400026479 Solanum tuberosum HOM05D000473 ORTHO05D001433 2.8e-07 58.5 107 31.8
FAN20G0543 Fragaria x ananassa HOM05D000473 ORTHO05D001433 3.6e-07 58.2 99 33.3
Nitab4.5_0003715g0050 Nicotiana tabacum HOM05D000473 ORTHO05D001433 3.6e-07 58.2 92 38.0
RcHm_v2.0_Chr7g0189731 Rosa chinensis HOM05D000473 ORTHO05D001433 3.6e-07 58.2 105 30.5
MSTRG.22898 Avicennia marina HOM05D000473 ORTHO05D001433 4.7e-07 57.8 106 32.1
DCAR_003359 Daucus carota HOM05D000473 ORTHO05D001433 4.7e-07 57.8 97 33.0
Glyma.08G011100 Glycine max HOM05D000473 ORTHO05D001433 4.7e-07 57.8 106 33.0
Solyc03g097380.4 Solanum lycopersicum HOM05D000473 ORTHO05D001433 4.7e-07 57.8 107 31.8
Sopen03g028140 Solanum pennellii HOM05D000473 ORTHO05D001433 4.7e-07 57.8 107 31.8
THA.LOC104818179 Tarenaya hassleriana HOM05D000473 ORTHO05D001433 4.7e-07 57.8 104 29.8
Cpa.g.c34675.1 Carica papaya HOM05D000473 ORTHO05D001433 6.2e-07 57.4 96 32.3
Solyc06g072700.3 Solanum lycopersicum HOM05D000473 ORTHO05D001433 6.2e-07 57.4 109 31.2
Sopen06g029070 Solanum pennellii HOM05D000473 ORTHO05D001433 6.2e-07 57.4 109 31.2
PGSC0003DMG400026938 Solanum tuberosum HOM05D000473 ORTHO05D001433 6.2e-07 57.4 109 31.2
TWI39G0740 Tripterygium wilfordii HOM05D000473 ORTHO05D001433 6.2e-07 57.4 106 31.1
CANSAT80G0585 Cannabis sativa HOM05D000473 ORTHO05D001433 8.1e-07 57.0 105 30.5
Phvul.002G285600 Phaseolus vulgaris HOM05D000473 ORTHO05D001433 8.1e-07 57.0 105 32.4
Oeu035900.1 Olea europaea HOM05D000473 ORTHO05D001433 1.1e-06 56.6 106 32.1
Thecc.03G132500 Theobroma cacao HOM05D000473 ORTHO05D001433 1.1e-06 56.6 106 29.2
Actinidia09625 Actinidia chinensis HOM05D000473 ORTHO05D001433 1.4e-06 56.2 106 32.1
A03p16620 Brassica napus HOM05D000473 ORTHO05D001433 1.4e-06 56.2 104 30.8
BraA03t10949Z Brassica rapa HOM05D000473 ORTHO05D001433 1.4e-06 56.2 104 30.8
CAN.G732.27 Capsicum annuum HOM05D000473 ORTHO05D001433 1.4e-06 56.2 106 31.1
Cc04_g09880 Coffea canephora HOM05D000473 ORTHO05D001433 1.4e-06 56.2 107 31.8
Manes.14G049200 Manihot esculenta HOM05D000473 ORTHO05D001433 1.4e-06 56.2 107 30.8
TWI14G0768 Tripterygium wilfordii HOM05D000473 ORTHO05D001433 1.4e-06 56.2 108 31.5
vmacro16730 Vaccinium macrocarpon HOM05D000473 ORTHO05D001433 1.4e-06 56.2 107 29.9
CARHR076990 Cardamine hirsuta HOM05D000473 ORTHO05D001433 1.8e-06 55.8 99 32.3
Duzib205G1431 Durio zibethinus HOM05D000473 ORTHO05D001433 1.8e-06 55.8 107 29.0
ECA246G1001 Erigeron canadensis HOM05D000473 ORTHO05D001433 1.8e-06 55.8 108 29.6
Migut.I00553 Erythranthe guttata HOM05D000473 ORTHO05D001433 1.8e-06 55.8 107 29.9
FAN04G2159 Fragaria x ananassa HOM05D000473 ORTHO05D001433 1.8e-06 55.8 105 29.5
FAN08G1848 Fragaria x ananassa HOM05D000473 ORTHO05D001433 1.8e-06 55.8 105 29.5
FAN13G0951 Fragaria x ananassa HOM05D000473 ORTHO05D001433 1.8e-06 55.8 105 29.5
Gorai.008G207300 Gossypium raimondii HOM05D000473 ORTHO05D001433 1.8e-06 55.8 106 29.2
Psat1g172920 Pisum sativum HOM05D000473 ORTHO05D001433 1.8e-06 55.8 107 30.8
MELO3C026194.2 Cucumis melo HOM05D000473 ORTHO05D001433 2.4e-06 55.5 106 29.2
Duzib068G1076 Durio zibethinus HOM05D000473 ORTHO05D001433 2.4e-06 55.5 107 29.0
Lj1g0020143 Lotus japonicus HOM05D000473 ORTHO05D001433 2.4e-06 55.5 105 30.5
Peaxi162Scf00023g02025 Petunia axillaris HOM05D000473 ORTHO05D001433 2.4e-06 55.5 90 37.8
Hund10117 Selenicereus undatus HOM05D000473 ORTHO05D001433 2.4e-06 55.5 104 31.7
THA.LOC104811577 Tarenaya hassleriana HOM05D000473 ORTHO05D001433 2.4e-06 55.5 104 30.8
TWI23G0674 Tripterygium wilfordii HOM05D000473 ORTHO05D001433 2.4e-06 55.5 106 29.2
HPP92_011534 Vanilla planifolia HOM05D000473 ORTHO05D001433 2.4e-06 55.5 107 30.8
HPP92_011538 Vanilla planifolia HOM05D000473 ORTHO05D001433 2.4e-06 55.5 107 30.8
AUR62038839 Chenopodium quinoa HOM05D000473 ORTHO05D001433 3.1e-06 55.1 104 30.8
ClCG06G018040 Citrullus lanatus HOM05D000473 ORTHO05D001433 3.1e-06 55.1 104 30.8
Cc11_g17230 Coffea canephora HOM05D000473 ORTHO05D001433 3.1e-06 55.1 93 37.6
Lalb_Chr18g0057251 Lupinus albus HOM05D000473 ORTHO05D001433 3.1e-06 55.1 106 33.0
VMungo1215G0606 Vigna mungo HOM05D000473 ORTHO05D001433 3.1e-06 55.1 104 31.7
Ah.11g046360 Amaranthus hybridus HOM05D000473 ORTHO05D001433 4.0e-06 54.7 105 30.5
BcaB01g04147 Brassica carinata HOM05D000473 ORTHO05D001433 4.0e-06 54.7 104 29.8
Cfa000044 Carpinus fangiana HOM05D000473 ORTHO05D001433 4.0e-06 54.7 104 31.7
FAN18G0823 Fragaria x ananassa HOM05D000473 ORTHO05D001433 4.0e-06 54.7 105 28.6
Gohir.D12G192700 Gossypium hirsutum HOM05D000473 ORTHO05D001433 4.0e-06 54.7 106 28.3
Hma1.2p1_0014F.1_g009200 Hydrangea macrophylla HOM05D000473 ORTHO05D001433 4.0e-06 54.7 106 29.2
Lsat_1_v5_gn_5_12001 Lactuca sativa HOM05D000473 ORTHO05D001433 4.0e-06 54.7 107 30.8
Nitab4.5_0000645g0050 Nicotiana tabacum HOM05D000473 ORTHO05D001433 4.0e-06 54.7 105 31.4
QL05p067889 Quercus lobata HOM05D000473 ORTHO05D001433 4.0e-06 54.7 103 32.0
SalBow1G6513 Salvia bowleyana HOM05D000473 ORTHO05D001433 4.0e-06 54.7 107 29.9
Cpa.g.sc4.168 Carica papaya HOM05D000473 ORTHO05D001433 5.2e-06 54.3 106 28.3
FvH4_5g08650 Fragaria vesca HOM05D000473 ORTHO05D001433 5.2e-06 54.3 105 28.6
Lsat_1_v5_gn_1_32961 Lactuca sativa HOM05D000473 ORTHO05D001433 5.2e-06 54.3 108 29.6
Peaxi162Scf00516g00333 Petunia axillaris HOM05D000473 ORTHO05D001433 5.2e-06 54.3 106 30.2
SGA_v2.0_scaffold37G14632 Striga asiatica HOM05D000473 ORTHO05D001433 5.2e-06 54.3 106 31.1
TPR.G12797 Trifolium pratense HOM05D000473 ORTHO05D001433 5.2e-06 54.3 107 29.0
arahy.Tifrunner.gnm1.ann1.RJG5DC Arachis hypogaea HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 31.7
BcaC01g06045 Brassica carinata HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 29.8
C03p19570 Brassica napus HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 29.8
BolC3t14337H Brassica oleracea HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 29.8
CiPaw.09G108200 Carya illinoinensis HOM05D000473 ORTHO05D001433 6.9e-06 53.9 103 32.0
CiPaw.11G005200 Carya illinoinensis HOM05D000473 ORTHO05D001433 6.9e-06 53.9 106 30.2
Haze_07010 Corylus avellana HOM05D000473 ORTHO05D001433 6.9e-06 53.9 103 31.1
DCAR_026233 Daucus carota HOM05D000473 ORTHO05D001433 6.9e-06 53.9 112 30.4
Glyma.09G013800 Glycine max HOM05D000473 ORTHO05D001433 6.9e-06 53.9 106 32.1
Hma1.2p1_0426F.1_g150640 Hydrangea macrophylla HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 30.8
Nitab4.5_0000021g0890 Nicotiana tabacum HOM05D000473 ORTHO05D001433 6.9e-06 53.9 107 29.9
Nitab4.5_0003447g0040 Nicotiana tabacum HOM05D000473 ORTHO05D001433 6.9e-06 53.9 107 29.9
Phvul.003G086400 Phaseolus vulgaris HOM05D000473 ORTHO05D001433 6.9e-06 53.9 104 31.7
Psat7g036680 Pisum sativum HOM05D000473 ORTHO05D001433 6.9e-06 53.9 107 29.0
SGA_v2.0_scaffold5G02859 Striga asiatica HOM05D000473 ORTHO05D001433 6.9e-06 53.9 106 30.2
Actinidia36821 Actinidia chinensis HOM05D000473 ORTHO05D001433 9.0e-06 53.5 106 30.2
arahy.Tifrunner.gnm1.ann1.WD6S8S Arachis hypogaea HOM05D000473 ORTHO05D001433 9.0e-06 53.5 104 30.8
BcaB04g19923 Brassica carinata HOM05D000473 ORTHO05D001433 9.0e-06 53.5 106 29.2
Ca_17562_v3 Cicer arietinum L. HOM05D000473 ORTHO05D001433 9.0e-06 53.5 107 27.1
DCAR_021635 Daucus carota HOM05D000417 ORTHO05D000342 9.0e-06 53.5 104 30.8
Thhalv10016103m.g Eutrema salsugineum HOM05D000473 ORTHO05D001433 9.0e-06 53.5 105 29.5
Gohir.A07G049700 Gossypium hirsutum HOM05D000473 ORTHO05D001433 9.0e-06 53.5 107 30.8
Gorai.001G057100 Gossypium raimondii HOM05D000473 ORTHO05D001433 9.0e-06 53.5 107 29.0
HanXRQChr08g0209971 Helianthus annuus HOM05D000473 ORTHO05D001433 9.0e-06 53.5 97 34.0
MBI11_g24614_MAGBIO Magnolia biondii HOM05D000473 ORTHO05D001433 9.0e-06 53.5 104 29.8
Rhsim13G0141500 Rhododendron simsii HOM05D000473 ORTHO05D001433 9.0e-06 53.5 103 34.0
Hund02459 Selenicereus undatus HOM05D000473 ORTHO05D001433 9.0e-06 53.5 107 30.8


User provided reference genes

Program Settings