Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8453 Trifolium pratense HOM05D005078 ORTHO05D007574 3.9e-87 324.7 159 100.0
Medtr4g094300 Medicago truncatula HOM05D005078 ORTHO05D007574 3.0e-63 245.4 157 79.0
TPR.G31481 Trifolium pratense HOM05D005078 ORTHO05D007574 6.8e-63 244.2 157 79.0
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 7.0e-60 234.2 157 75.8
Psat7g097600 Pisum sativum HOM05D005078 ORTHO05D007574 2.3e-58 229.2 157 75.8
Glyma.05G120400 Glycine max HOM05D005078 ORTHO05D007574 1.9e-57 226.1 157 72.6
Glyma.08G075100 Glycine max HOM05D005078 ORTHO05D007574 2.5e-57 225.7 157 73.9
arahy.Tifrunner.gnm1.ann1.BEU0Z4 Arachis hypogaea HOM05D005078 ORTHO05D007574 1.0e-55 220.3 157 73.2
arahy.Tifrunner.gnm1.ann1.T96GLE Arachis hypogaea HOM05D005078 ORTHO05D007574 1.0e-55 220.3 157 73.2
Lalb_Chr07g0189431 Lupinus albus HOM05D005078 ORTHO05D007574 6.8e-55 217.6 157 73.2
Phvul.002G206400 Phaseolus vulgaris HOM05D005078 ORTHO05D007574 4.4e-54 214.9 157 70.7
Lj4g0026324 Lotus japonicus HOM05D005078 ORTHO05D007574 1.3e-53 213.4 157 71.3
arahy.Tifrunner.gnm1.ann1.TCU5QQ Arachis hypogaea HOM05D005078 ORTHO05D007574 2.2e-53 212.6 148 75.7
VMungo0251G0911 Vigna mungo HOM05D005078 ORTHO05D007574 2.2e-53 212.6 158 70.3
Atru.chr6.903 Acer truncatum HOM05D005078 ORTHO05D007574 1.6e-48 196.4 162 64.8
Dinv19325 Davidia involucrata HOM05D005078 ORTHO05D007574 3.6e-48 195.3 162 64.2
QL08p030872 Quercus lobata HOM05D005078 ORTHO05D007574 1.4e-47 193.4 156 65.4
QL11p019326 Quercus lobata HOM05D005078 ORTHO05D007574 1.4e-47 193.4 156 65.4
Ciclev10000359m.g Citrus clementina HOM05D005078 ORTHO05D007574 1.5e-46 189.9 162 63.0
Cc02_g21860 Coffea canephora HOM05D005078 ORTHO05D007574 7.5e-46 187.6 162 63.0
Cfa005576 Carpinus fangiana HOM05D005078 ORTHO05D007574 2.2e-45 186.0 156 62.8
DCAR_001802 Daucus carota HOM05D005078 ORTHO05D007574 3.7e-45 185.3 162 62.3
COL.COLO4_20871 Corchorus olitorius HOM05D005078 ORTHO05D007574 6.4e-45 184.5 162 63.0
Duzib052G0049 Durio zibethinus HOM05D005078 ORTHO05D007574 6.4e-45 184.5 156 64.7
TWI59G0763 Tripterygium wilfordii HOM05D005078 ORTHO05D007574 6.4e-45 184.5 162 61.7
Solyc10g047050.2 Solanum lycopersicum HOM05D005078 ORTHO05D007574 8.3e-45 184.1 163 60.7
Cpa.g.sc63.26 Carica papaya HOM05D005078 ORTHO05D007574 1.1e-44 183.7 162 61.1
AT3G19720 Arabidopsis thaliana HOM05D005078 ORTHO05D007574 1.4e-44 183.3 157 61.1
PGSC0003DMG400005500 Solanum tuberosum HOM05D005078 ORTHO05D007574 1.4e-44 183.3 163 61.3
MD08G1222200 Malus domestica HOM05D005078 ORTHO05D007574 1.9e-44 183.0 161 61.5
Sopen10g017000 Solanum pennellii HOM05D005078 ORTHO05D007574 1.9e-44 183.0 163 60.7
Thecc.02G143700 Theobroma cacao HOM05D005078 ORTHO05D007574 1.9e-44 183.0 162 61.7
MD15G1415600 Malus domestica HOM05D005078 ORTHO05D007574 2.4e-44 182.6 161 61.5
Prupe.1G560000 Prunus persica HOM05D005078 ORTHO05D007574 2.4e-44 182.6 161 60.9
Haze_10783 Corylus avellana HOM05D005078 ORTHO05D007574 3.2e-44 182.2 170 58.2
Eucgr.I02694 Eucalyptus grandis HOM05D005078 ORTHO05D007574 3.2e-44 182.2 160 61.9
FAN18G1729 Fragaria x ananassa HOM05D005078 ORTHO05D007574 3.2e-44 182.2 155 63.2
PGR142G3913 Punica granatum HOM05D005078 ORTHO05D007574 3.2e-44 182.2 161 62.7
TAR628G0147 Trochodendron aralioides HOM05D005078 ORTHO05D007574 3.2e-44 182.2 162 61.7
FAN13G1064 Fragaria x ananassa HOM05D005078 ORTHO05D007574 4.1e-44 181.8 155 63.2
Lj9A318G98 Lonicera japonica HOM05D005078 ORTHO05D007574 7.0e-44 181.0 152 63.8
BcaC09g48935 Brassica carinata HOM05D005078 ORTHO05D007574 9.2e-44 180.6 157 61.1
A01p34970 Brassica napus HOM05D005078 ORTHO05D007574 9.2e-44 180.6 157 61.1
C01p44380 Brassica napus HOM05D005078 ORTHO05D007574 9.2e-44 180.6 157 61.1
BolC1t04403H Brassica oleracea HOM05D005078 ORTHO05D007574 9.2e-44 180.6 157 61.1
BraA01t03580Z Brassica rapa HOM05D005078 ORTHO05D007574 9.2e-44 180.6 157 61.1
Manes.10G130600 Manihot esculenta HOM05D005078 ORTHO05D007574 9.2e-44 180.6 161 61.5
Rhsim05G0111000 Rhododendron simsii HOM05D005078 ORTHO05D007574 9.2e-44 180.6 162 59.9
Oeu037204.1 Olea europaea HOM05D005078 ORTHO05D007574 1.2e-43 180.3 156 62.2
Sp3g17760 Schrenkiella parvula HOM05D005078 ORTHO05D007574 1.2e-43 180.3 157 61.1
BcaB04g20681 Brassica carinata HOM05D005078 ORTHO05D007574 1.6e-43 179.9 157 61.1
Carub.0003s1960 Capsella rubella HOM05D005078 ORTHO05D007574 1.6e-43 179.9 157 60.5
CSS0037915 Camellia sinensis var. sinensis HOM05D005078 ORTHO05D007574 2.0e-43 179.5 162 59.9
CiPaw.06G150900 Carya illinoinensis HOM05D005078 ORTHO05D007574 2.7e-43 179.1 159 59.7
RcHm_v2.0_Chr7g0225491 Rosa chinensis HOM05D005078 ORTHO05D007574 2.7e-43 179.1 161 62.1
Sc14g0003200 Simmondsia chinensis HOM05D005078 ORTHO05D007574 2.7e-43 179.1 157 61.8
CSS0009626 Camellia sinensis var. sinensis HOM05D005078 ORTHO05D007574 4.6e-43 178.3 162 59.9
ClCG09G013630 Citrullus lanatus HOM05D005078 ORTHO05D007574 4.6e-43 178.3 162 59.9
Sabra06G0199100 Salix brachista HOM05D005078 ORTHO05D007574 4.6e-43 178.3 160 59.4
SGA_v2.0_scaffold332G48941 Striga asiatica HOM05D005078 ORTHO05D007574 4.6e-43 178.3 160 60.6
Peaxi162Scf00003g03733 Petunia axillaris HOM05D005078 ORTHO05D007574 7.8e-43 177.6 162 59.9
Potri.006G254900 Populus trichocarpa HOM05D005078 ORTHO05D007574 7.8e-43 177.6 160 59.4
Aa31LG8G6520 Aethionema arabicum HOM05D005078 ORTHO05D007574 1.0e-42 177.2 157 61.1
TWI23G1171 Tripterygium wilfordii HOM05D005078 ORTHO05D007574 1.0e-42 177.2 163 62.0
CsaV3_7G006040 Cucumis sativus L. HOM05D005078 ORTHO05D007574 1.3e-42 176.8 162 59.3
Gohir.D02G194900 Gossypium hirsutum HOM05D005078 ORTHO05D007574 1.3e-42 176.8 162 59.3
Gorai.005G217700 Gossypium raimondii HOM05D005078 ORTHO05D007574 1.3e-42 176.8 162 59.3
PSO170G4843 Papaver somniferum HOM05D005078 ORTHO05D007574 1.3e-42 176.8 159 61.0
Thhalv10020106m.g Eutrema salsugineum HOM05D005078 ORTHO05D007574 1.7e-42 176.4 157 59.9
Sed0005211 Sechium edule HOM05D005078 ORTHO05D007574 1.7e-42 176.4 163 59.5
AL3G33190 Arabidopsis lyrata HOM05D005078 ORTHO05D007574 2.3e-42 176.0 157 59.9
MBI03_g13502_MAGBIO Magnolia biondii HOM05D005078 ORTHO05D007574 2.3e-42 176.0 157 60.5
GSVIVG01029707001 Vitis vinifera HOM05D005078 ORTHO05D007574 2.3e-42 176.0 122 74.6
Actinidia04428 Actinidia chinensis HOM05D005078 ORTHO05D007574 3.0e-42 175.6 156 61.5
Oeu047373.1 Olea europaea HOM05D005078 ORTHO05D007574 3.9e-42 175.3 146 64.4
PSO528G0068 Papaver somniferum HOM05D005078 ORTHO05D007574 5.0e-42 174.9 159 60.4
CARHR095240 Cardamine hirsuta HOM05D005078 ORTHO05D007574 6.6e-42 174.5 157 59.2
Migut.B00641 Erythranthe guttata HOM05D005078 ORTHO05D007574 6.6e-42 174.5 157 61.1
MSTRG.16563 Avicennia marina HOM05D005078 ORTHO05D007574 8.6e-42 174.1 159 59.1
CANSAT56G3597 Cannabis sativa HOM05D005078 ORTHO05D007574 1.1e-41 173.7 160 59.4
HanXRQChr11g0337601 Helianthus annuus HOM05D005078 ORTHO05D007574 1.5e-41 173.3 120 73.3
Sed0011242 Sechium edule HOM05D005078 ORTHO05D007574 1.5e-41 173.3 162 59.3
Lsat_1_v5_gn_7_79780 Lactuca sativa HOM05D005078 ORTHO05D007574 3.3e-41 172.2 120 73.3
QL09p047099 Quercus lobata HOM05D005078 ORTHO05D007574 5.6e-41 171.4 167 58.1
Aqoxy6G00300 Aquilegia oxysepala HOM05D005078 ORTHO05D007574 7.3e-41 171.0 152 61.8
ECA236G3503 Erigeron canadensis HOM05D005078 ORTHO05D007574 1.6e-40 169.9 146 61.6
vmacro19912 Vaccinium macrocarpon HOM05D005078 ORTHO05D007574 4.7e-40 168.3 156 60.3
CAN.G1.26 Capsicum annuum HOM05D005078 ORTHO05D007574 8.1e-40 167.5 124 70.2
THA.LOC104826527 Tarenaya hassleriana HOM05D005078 ORTHO05D007574 1.1e-39 167.2 153 58.8
EL10Ac8g19337 Beta vulgaris HOM05D005078 ORTHO05D007574 5.2e-39 164.9 157 58.6
AUR62027389 Chenopodium quinoa HOM05D005078 ORTHO05D007574 4.4e-38 161.8 157 57.3
Hund06705 Selenicereus undatus HOM05D005078 ORTHO05D007574 4.4e-38 161.8 150 60.0
AUR62031303 Chenopodium quinoa HOM05D005078 ORTHO05D007574 2.2e-37 159.5 147 60.5
SEGI_00685 Sequoiadendron giganteum HOM05D005078 ORTHO05D007574 2.2e-37 159.5 157 53.5
ATR0090G021 Amborella trichopoda HOM05D005078 ORTHO05D007574 4.9e-37 158.3 122 66.4
Ah.09g232120 Amaranthus hybridus HOM05D005078 ORTHO05D007574 6.4e-37 157.9 157 56.1
MELO3C018688.2 Cucumis melo HOM05D005078 ORTHO05D007574 1.1e-36 157.1 196 49.5
HPP92_016129 Vanilla planifolia HOM05D005078 ORTHO05D007574 6.0e-35 151.4 116 66.4
Dinv24223 Davidia involucrata HOM05D005078 ORTHO05D007574 8.6e-34 147.5 157 55.4
SalBow5G1047 Salvia bowleyana HOM05D005078 ORTHO05D007574 4.3e-33 145.2 111 69.4
Zm00001eb408290 Zea mays HOM05D005078 ORTHO05D007574 1.2e-32 143.7 124 60.5
FvH4_5g30610 Fragaria vesca HOM05D005078 ORTHO05D007574 2.8e-32 142.5 104 71.2
Nitab4.5_0010375g0010 Nicotiana tabacum HOM05D005078 ORTHO05D007574 1.1e-31 140.6 163 50.9
Mapoly0079s0059 Marchantia polymorpha HOM05D005078 ORTHO05D007574 3.1e-31 139.0 152 50.0
Pp3c2_33000 Physcomitrium patens HOM05D005078 ORTHO05D007574 3.1e-31 139.0 119 58.0
Nitab4.5_0000078g0180 Nicotiana tabacum HOM05D005078 ORTHO05D007574 8.9e-31 137.5 163 50.3
Pp3c1_7590 Physcomitrium patens HOM05D005078 ORTHO05D007574 1.2e-30 137.1 131 54.2
Gohir.A03G171500 Gossypium hirsutum HOM05D005078 ORTHO05D007574 1.5e-30 136.7 162 49.4
SMO169G0059 Selaginella moellendorffii HOM05D005078 ORTHO05D007574 4.4e-30 135.2 115 58.3
FAN04G1076 Fragaria x ananassa HOM05D005078 ORTHO05D007574 1.3e-29 133.7 155 51.0
CBR_g24372 Chara braunii HOM05D005078 ORTHO05D007574 3.9e-26 122.1 104 59.6
Pp3c2_33410 Physcomitrium patens HOM05D005078 ORTHO05D007574 1.8e-23 113.2 114 50.9
TPR.G31207 Trifolium pratense HOM05D005078 ORTHO05D007574 2.0e-22 109.8 99 63.6
MCO03G066 Micromonas commoda HOM05D005078 ORTHO05D007574 2.9e-21 105.9 113 46.0
PRCOL_00002637 Prasinoderma coloniale HOM05D005078 ORTHO05D007574 4.2e-20 102.1 123 43.1
Cre10.g433050 Chlamydomonas reinhardtii HOM05D005078 ORTHO05D007574 2.4e-15 86.3 117 42.7
QL08p030853 Quercus lobata HOM05D005078 ORTHO05D007574 4.4e-14 82.0 72 54.2
Dinv24225 Davidia involucrata HOM05D005078 ORTHO05D007574 7.6e-14 81.3 69 66.7
QL11p019306 Quercus lobata HOM05D005078 ORTHO05D007574 2.9e-13 79.3 69 55.1
Os12g0178700 Oryza sativa ssp. japonica HOM05D005078 ORTHO05D007574 4.2e-12 75.5 57 63.2


User provided reference genes

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