Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.8e-39 164.9 85 100.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.9e-32 142.1 82 86.6
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 2.1e-31 138.7 81 85.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-30 135.6 82 80.5
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.6e-29 130.2 85 78.8
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.9e-29 129.8 85 76.5
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.7e-28 129.0 85 77.6
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 2.9e-28 128.3 85 76.5
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.8e-28 127.9 80 80.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.8e-28 127.9 85 76.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.4e-27 125.9 82 75.6
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.4e-27 125.9 85 77.6
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.4e-27 125.2 85 75.3
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.4e-27 125.2 84 77.4
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.2e-27 124.8 82 76.8
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.2e-27 124.8 85 75.3
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 3.2e-27 124.8 85 77.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 5.5e-27 124.0 84 77.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 7.1e-27 123.6 85 75.3
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 7.1e-27 123.6 84 76.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 9.3e-27 123.2 82 73.2
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.3e-27 123.2 85 72.9
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 2.1e-26 122.1 83 74.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.7e-26 121.7 85 71.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 3.5e-26 121.3 83 72.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 4.6e-26 120.9 82 74.4
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.6e-26 120.9 85 70.6
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.0e-26 120.6 85 74.1
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.0e-26 120.6 85 72.9
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.3e-25 119.4 85 71.8
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.3e-25 119.4 85 71.8
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.8e-25 119.0 82 72.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 2.3e-25 118.6 82 74.4
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.3e-25 118.6 85 71.8
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.3e-25 118.6 83 72.3
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.3e-25 118.6 80 72.5
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.0e-25 118.2 85 68.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-25 118.2 82 70.7
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.0e-25 118.2 85 71.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 3.0e-25 118.2 82 74.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.9e-25 117.9 85 71.8
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.9e-25 117.9 82 73.2
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.1e-25 117.5 85 70.6
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.1e-25 117.5 82 70.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 5.1e-25 117.5 90 71.1
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 6.7e-25 117.1 83 72.3
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 6.7e-25 117.1 85 69.4
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 8.7e-25 116.7 85 72.9
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.1e-24 116.3 83 69.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.1e-24 116.3 82 70.7
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.1e-24 116.3 82 72.0
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.1e-24 116.3 80 71.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.9e-24 115.5 82 72.0
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.9e-24 115.5 85 70.6
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.5e-24 115.2 83 68.7
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 3.3e-24 114.8 83 68.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 3.3e-24 114.8 85 69.4
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.3e-24 114.4 85 67.1
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.6e-24 114.0 85 69.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 5.6e-24 114.0 85 68.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.4e-24 113.6 82 67.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.4e-24 113.6 85 67.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 9.6e-24 113.2 82 69.5
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.3e-23 112.8 82 68.3
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-23 112.8 82 70.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.3e-23 112.8 85 65.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.3e-23 112.8 85 67.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.3e-23 112.8 85 67.1
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-23 112.5 82 68.3
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.6e-23 112.5 82 70.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.1e-23 112.1 82 69.5
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 4.8e-23 110.9 85 65.9
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 4.8e-23 110.9 84 65.5
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 4.8e-23 110.9 82 64.6
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.2e-23 110.2 86 67.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.4e-22 109.4 92 65.2
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.4e-22 109.4 92 65.2
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-22 109.0 82 68.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.8e-22 109.0 85 65.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-22 109.0 82 65.9
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.8e-22 109.0 82 68.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.4e-22 108.6 85 64.7
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.4e-22 108.6 69 78.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.4e-22 108.6 82 65.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.1e-22 108.2 82 67.1
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.3e-22 107.5 82 67.1
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.3e-22 107.5 82 67.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 5.3e-22 107.5 85 65.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 6.9e-22 107.1 82 67.1
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 6.9e-22 107.1 82 67.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 6.9e-22 107.1 85 63.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.9e-22 107.1 85 63.5
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 6.9e-22 107.1 82 64.6
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 9.0e-22 106.7 82 69.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.2e-21 106.3 66 77.3
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.2e-21 106.3 85 63.5
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.5e-21 105.9 85 65.9
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.5e-21 105.9 82 65.9
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.0e-21 105.5 82 64.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.5e-21 104.4 82 61.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 4.5e-21 104.4 66 75.8
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.8e-21 104.0 82 64.6
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 5.8e-21 104.0 82 59.8
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.8e-21 104.0 85 63.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 7.6e-21 103.6 82 61.0
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-20 102.8 85 67.1
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.3e-20 102.8 82 62.2
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.7e-20 102.4 89 62.9
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.8e-20 101.3 82 68.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.9e-20 100.9 84 59.5
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 8.4e-20 100.1 66 72.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-19 99.4 82 61.0
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.9e-19 99.0 66 71.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.9e-19 99.0 82 61.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.9e-19 99.0 80 63.8
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.5e-19 98.6 66 68.2
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.2e-19 97.8 66 69.7
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.1e-19 97.1 66 71.2
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 7.1e-19 97.1 82 61.0
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-18 96.3 82 61.0
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.2e-18 96.3 82 57.3
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.1e-18 95.5 68 67.6
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.1e-18 95.5 76 61.8
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.3e-17 92.8 80 60.0
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.1e-17 90.9 66 65.2
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-16 89.4 66 65.2
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-16 88.2 66 63.6
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 3.3e-16 88.2 66 63.6
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 8.2e-15 83.6 84 52.4
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.4e-14 82.8 64 60.9
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 5.0e-12 74.3 66 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 9.4e-11 70.1 85 50.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-10 69.7 49 75.5
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 6.1e-10 67.4 79 50.6
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.1e-10 67.4 79 48.1
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.9e-10 67.0 79 48.1
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.4e-09 66.2 83 44.6
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.8e-09 65.9 79 43.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.1e-08 63.2 79 43.0
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.9e-08 62.4 44 75.0
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.4e-08 60.5 76 43.4
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 4.8e-07 57.8 55 61.8
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.3e-07 57.4 90 40.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.8e-06 55.8 46 63.0
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.1e-06 55.1 55 60.0
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 6.9e-06 53.9 46 67.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 6.9e-06 53.9 39 64.1


User provided reference genes

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