Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.4e-267 925.6 749 100.0
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.6e-106 391.3 753 50.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.3e-76 291.2 374 60.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.6e-74 283.9 281 69.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 6.9e-65 253.1 290 56.2
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.5e-56 225.3 304 53.3
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.7e-55 221.9 289 54.3
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.1e-51 209.1 292 52.1
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 7.4e-51 206.5 325 53.8
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 2.0e-48 198.4 299 50.5
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.5e-48 197.2 297 49.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.3e-44 184.9 299 50.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.3e-41 173.7 311 47.6
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.7e-39 168.7 304 47.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 2.5e-38 164.9 306 43.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.8e-31 141.0 231 51.5
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 8.5e-31 139.8 269 46.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.4e-30 139.0 294 37.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.6e-29 135.6 238 48.3
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.6e-29 135.6 285 46.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.1e-29 135.2 283 39.2
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 4.6e-29 134.0 283 39.9
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.0e-28 132.9 267 38.6
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.4e-28 132.5 293 37.2
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.3e-28 131.7 296 38.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.7e-28 130.2 241 41.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.7e-28 130.2 279 38.0
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 6.7e-28 130.2 301 38.2
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 6.7e-28 130.2 288 39.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 4.3e-27 127.5 266 37.2
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.3e-26 125.9 292 35.3
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.1e-25 122.9 303 36.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.4e-25 122.5 134 56.0
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.4e-25 122.5 273 42.9
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.8e-25 122.1 293 36.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.2e-24 119.4 276 36.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.6e-24 118.2 276 37.3
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 5.9e-24 117.1 272 39.0
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 7.7e-24 116.7 270 38.1
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-23 115.9 231 40.3
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.7e-23 115.5 119 58.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.7e-23 115.5 286 35.7
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.8e-23 114.4 267 37.8
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.1e-22 112.8 250 36.8
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.2e-22 110.9 266 36.8
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.5e-22 110.5 225 40.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.4e-22 109.8 267 37.8
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.6e-21 109.0 225 39.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 3.6e-21 107.8 228 36.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.4e-20 105.9 271 34.3
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.3e-20 105.1 315 33.7
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.1e-20 104.0 304 40.8
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.1e-19 102.8 234 38.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-19 102.4 307 32.2
Ca_21034_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 1.5e-19 102.4 119 54.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-19 101.7 297 36.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.6e-19 101.7 283 39.9
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 9.7e-19 99.8 300 34.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.3e-18 99.4 291 34.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.7e-18 99.0 297 34.7
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.7e-18 99.0 115 53.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 2.2e-18 98.6 260 35.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-18 98.6 306 34.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.2e-18 98.6 300 38.3
Ca_23029_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.7e-18 97.8 119 51.3
Ca_23031_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.7e-18 97.8 119 51.3
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 4.8e-18 97.4 126 49.2
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 6.3e-18 97.1 294 33.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 8.2e-18 96.7 236 34.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 8.2e-18 96.7 285 38.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.1e-17 96.3 224 36.2
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.4e-17 95.9 295 34.9
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.8e-17 95.5 276 33.7
Ca_23665_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.8e-17 95.5 124 48.4
Ca_03472_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.4e-17 95.1 119 50.4
Ca_02573_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 3.1e-17 94.7 150 42.7
Ca_26148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 3.1e-17 94.7 117 48.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 4.1e-17 94.4 113 53.1
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 5.3e-17 94.0 312 36.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.0e-17 93.6 295 33.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 9.1e-17 93.2 276 33.7
Ca_11726_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.2e-16 92.8 123 48.0
Ca_03148_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.6e-16 92.4 113 54.0
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.6e-16 92.4 310 30.6
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.0e-16 92.0 281 33.8
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.6e-16 91.7 245 34.7
Ca_27198_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 5.9e-16 90.5 114 49.1
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 5.9e-16 90.5 317 30.3
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 7.7e-16 90.1 227 34.8
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 7.7e-16 90.1 289 32.5
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.3e-15 89.4 133 49.6
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.3e-15 89.4 292 33.2
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-15 89.0 243 35.0
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-15 89.0 150 41.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.7e-15 89.0 243 35.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.7e-15 89.0 150 41.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.7e-15 89.0 278 33.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.2e-15 88.6 278 31.3
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 2.9e-15 88.2 101 49.5
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.8e-15 87.8 284 33.1
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.8e-15 87.8 264 33.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 6.5e-15 87.0 285 32.3
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-14 86.3 281 32.4
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.5e-14 85.9 301 29.9
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-14 85.1 284 31.3
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 2.5e-14 85.1 152 38.8
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 4.2e-14 84.3 316 31.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 7.2e-14 83.6 307 29.3
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.4e-14 83.2 305 30.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.4e-14 83.2 307 29.6
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.2e-13 82.8 120 46.7
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.6e-13 82.4 263 31.6
Ca_13861_v3 Cicer arietinum L. HOM05D002031 ORTHO05D003557 1.6e-13 82.4 150 41.3
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.6e-13 81.3 257 37.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 4.7e-13 80.9 289 30.1
Ca_26248_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 4.7e-13 80.9 111 46.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 4.7e-13 80.9 264 33.7
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 6.1e-13 80.5 260 33.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 8.0e-13 80.1 239 32.6
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 8.0e-13 80.1 89 52.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.0e-12 79.7 267 29.6
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.8e-12 79.0 253 30.4
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.8e-12 79.0 89 51.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-12 78.6 313 30.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-12 78.6 313 30.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.2e-12 77.4 307 30.6
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.2e-12 77.4 307 30.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.7e-12 77.0 285 29.5
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 6.7e-12 77.0 296 30.4
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 8.8e-12 76.6 150 38.7
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 8.8e-12 76.6 273 28.9
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.5e-11 75.9 300 32.7
Ca_17040_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.0e-11 75.5 86 54.7
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 2.0e-11 75.5 271 32.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-11 75.1 265 30.9
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.3e-11 74.7 259 31.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.3e-11 74.7 338 28.4
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 4.4e-11 74.3 309 30.4
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 5.7e-11 73.9 127 38.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 7.5e-11 73.6 120 38.3
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 7.5e-11 73.6 101 43.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 7.5e-11 73.6 296 28.0
Ca_27381_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.3e-10 72.8 119 42.0
Ca_14361_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 1.7e-10 72.4 68 57.4
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.7e-10 72.4 292 30.5
Ca_27854_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.8e-10 71.6 96 49.0
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 4.8e-10 70.9 344 26.5
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 4.8e-10 70.9 265 30.9
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.1e-09 69.7 99 45.5
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-09 68.9 146 37.0
Ca_17168_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 1.8e-09 68.9 115 43.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.8e-09 68.9 313 27.5
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.8e-09 68.9 314 30.9
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 2.4e-09 68.6 72 52.8
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.1e-09 68.2 240 29.6
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 5.3e-09 67.4 277 31.8
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.2e-08 66.2 103 43.7
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.2e-08 66.2 127 38.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.0e-08 65.5 286 31.1
Ca_14167_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 2.7e-08 65.1 67 56.7
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 3.5e-08 64.7 132 36.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 5.9e-08 63.9 148 33.8
Ca_03099_v3 Cicer arietinum L. HOM05D002502 ORTHO05D018988 7.7e-08 63.5 94 45.7
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.7e-07 62.4 39 74.4
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.7e-07 62.4 151 35.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.2e-07 62.0 35 80.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.9e-07 61.6 46 63.0
Ca_25736_v3 Cicer arietinum L. HOM05D002502 ORTHO05D013571 6.5e-07 60.5 58 56.9
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 8.5e-07 60.1 36 77.8
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 1.1e-06 59.7 44 70.5
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 1.1e-06 59.7 148 32.4
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 2.5e-06 58.5 161 36.6
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 3.2e-06 58.2 100 44.0
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.2e-06 58.2 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.2e-06 58.2 36 75.0
Psat7g056320 Pisum sativum HOM05D004299 ORTHO05D003557 3.2e-06 58.2 79 45.6
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 4.2e-06 57.8 43 58.1
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 5.5e-06 57.4 281 27.0
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 7.2e-06 57.0 340 25.9
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 9.4e-06 56.6 52 57.7
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 9.4e-06 56.6 39 69.2


User provided reference genes

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