Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 2.0e-289 998.4 527 100.0
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.3e-279 964.5 486 97.1
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 1.2e-278 962.6 486 97.3
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 1.6e-278 962.2 486 97.1
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 9.2e-274 946.4 486 94.9
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 1.5e-271 939.1 486 94.0
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 7.3e-271 936.8 486 94.2
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 9.5e-271 936.4 486 94.0
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 1.6e-270 935.6 486 94.0
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 1.8e-269 932.2 486 93.2
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 8.0e-262 906.7 486 90.3
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 1.7e-251 872.5 488 86.9
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.5e-249 864.8 488 86.3
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 4.6e-249 864.4 488 86.1
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 4.6e-249 864.4 489 86.3
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.0e-249 864.0 488 86.1
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 6.0e-249 864.0 488 86.1
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 7.8e-249 863.6 488 86.1
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 1.7e-248 862.4 488 85.7
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 2.3e-248 862.1 488 86.3
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 3.9e-248 861.3 488 86.3
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 8.1e-246 853.6 509 82.1
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 6.8e-245 850.5 487 84.0
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 3.4e-244 848.2 487 84.4
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 3.4e-244 848.2 488 83.4
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 3.4e-244 848.2 488 83.4
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 4.4e-244 847.8 486 85.2
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.3e-243 846.3 488 83.8
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 1.3e-243 846.3 488 83.8
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.3e-243 846.3 487 85.2
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 1.3e-243 846.3 488 83.4
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.7e-243 845.9 488 83.2
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 6.4e-243 844.0 488 84.0
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 8.4e-243 843.6 488 83.6
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 1.4e-242 842.8 488 84.0
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 2.4e-242 842.0 488 83.6
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 2.4e-242 842.0 488 83.6
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 4.2e-242 841.3 488 83.2
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 7.1e-242 840.5 488 83.8
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.1e-241 839.0 488 83.6
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 3.5e-241 838.2 487 83.8
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 3.5e-241 838.2 488 83.4
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.0e-240 836.6 488 83.0
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 1.0e-240 836.6 488 83.0
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.7e-240 835.9 488 83.4
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 3.0e-240 835.1 488 83.6
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 3.0e-240 835.1 514 79.2
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 5.1e-240 834.3 488 83.8
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.9e-239 832.4 488 82.6
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 5.6e-239 830.9 526 78.3
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 1.6e-238 829.3 485 83.5
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 2.8e-238 828.6 488 83.2
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 6.2e-238 827.4 486 82.1
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.1e-237 826.6 488 81.1
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.8e-237 825.9 486 81.9
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.8e-237 825.9 486 81.9
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.1e-237 825.1 486 81.9
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 3.1e-237 825.1 525 77.5
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 5.3e-237 824.3 488 82.4
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 6.9e-237 823.9 488 82.2
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 1.3e-235 819.7 486 81.3
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.7e-235 819.3 489 81.2
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 1.4e-234 816.2 488 81.6
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 1.4e-234 816.2 490 81.6
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 2.4e-234 815.5 488 80.3
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 4.2e-234 814.7 489 80.6
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 5.4e-234 814.3 488 80.7
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 7.1e-234 813.9 556 74.6
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 7.1e-234 813.9 488 80.7
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 7.1e-234 813.9 488 80.7
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 7.1e-234 813.9 488 80.7
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 9.3e-234 813.5 488 80.1
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 4.6e-233 811.2 488 80.1
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 4.6e-233 811.2 488 80.1
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 4.6e-233 811.2 488 80.1
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 4.6e-233 811.2 487 80.3
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 1.3e-232 809.7 488 80.1
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 1.7e-232 809.3 488 79.7
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 1.7e-232 809.3 488 79.7
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 3.9e-232 808.1 488 80.1
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 3.9e-232 808.1 488 79.5
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 2.8e-230 802.0 498 78.9
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 8.1e-230 800.4 488 79.1
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 1.8e-229 799.3 488 79.3
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 3.4e-228 795.0 511 77.1
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 2.4e-226 788.9 487 78.2
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 2.4e-226 788.9 487 78.2
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 9.3e-226 786.9 487 78.2
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 9.3e-226 786.9 487 78.2
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 3.5e-225 785.0 487 78.2
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 1.6e-222 776.2 514 75.9
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 2.8e-222 775.4 705 59.9
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 6.2e-222 774.2 506 75.7
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 1.2e-220 770.0 488 77.9
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 1.3e-216 756.5 505 74.9
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 2.3e-216 755.7 488 74.6
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 9.6e-215 750.4 547 71.1
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.3e-211 740.0 545 71.0
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 5.1e-208 728.0 488 71.9
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 2.8e-206 722.2 432 82.2
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 5.3e-205 718.0 489 72.0
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 5.3e-205 718.0 489 72.0
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.3e-205 718.0 487 73.9
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 9.0e-205 717.2 486 73.3
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 8.2e-198 694.1 455 74.9
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 3.0e-192 675.6 511 68.1
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.3e-187 660.2 488 69.3
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.3e-187 660.2 524 67.0
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 3.8e-187 658.7 411 78.1
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 5.9e-180 634.8 349 90.5
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.7e-179 633.3 349 90.3
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 3.8e-179 632.1 484 66.3
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 5.7e-175 618.2 488 61.7
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 8.0e-169 597.8 494 60.1
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 5.7e-167 591.7 490 59.2
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 3.3e-162 575.9 370 74.9
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 2.3e-160 569.7 491 61.7
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 5.0e-155 552.0 491 55.8
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 3.4e-151 539.3 320 82.8
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 2.1e-145 520.0 377 71.1
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 8.9e-136 488.0 500 49.6
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 2.1e-129 466.8 261 86.6
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 1.9e-122 443.7 274 81.4
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 2.1e-121 440.3 258 82.9
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 9.9e-119 431.4 258 79.5
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 4.6e-116 422.5 319 70.8
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 5.3e-112 409.1 295 73.6
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 5.8e-111 405.6 241 81.3
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.5e-108 396.4 233 82.0
Cpa.g.sc17.19 Carica papaya HOM05D003313 ORTHO05D004217 1.2e-79 301.6 167 86.2
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 2.0e-71 274.2 262 58.8
vmacro01642 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 5.2e-67 259.6 235 60.0
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 5.4e-56 223.0 322 42.9
SHI06531 Sapria himalayana HOM05D003313 ORTHO05D004217 3.0e-51 207.2 124 76.6
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 7.5e-50 202.6 442 29.9
Duzib248G1591 Durio zibethinus HOM05D003313 ORTHO05D004217 2.7e-47 194.1 110 80.0
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 1.8e-43 181.4 120 75.8
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 1.8e-40 171.4 105 83.8
Hma1.2p1_0105F.1_g050850 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 2.5e-37 161.0 114 71.1
SHI06530 Sapria himalayana HOM05D003313 ORTHO05D004217 2.6e-34 151.0 146 56.8
vmacro01643 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 3.4e-34 150.6 99 74.7
Duzib128G1568 Durio zibethinus HOM05D003313 ORTHO05D004217 7.5e-34 149.4 88 75.0
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 1.4e-32 145.2 503 27.6
SHI06534 Sapria himalayana HOM05D003313 ORTHO05D004217 2.4e-32 144.4 102 72.5
Glyma.18G148901 Glycine max HOM05D003313 ORTHO05D004217 2.7e-31 141.0 77 90.9
arahy.Tifrunner.gnm1.ann1.VIS9FS Arachis hypogaea HOM05D003313 ORTHO05D004217 7.8e-31 139.4 82 85.4
Nitab4.5_0004668g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.3e-30 137.9 115 63.5
MD10G1149000 Malus domestica HOM05D003313 ORTHO05D004217 2.1e-28 131.3 72 83.3
HanXRQChr14g0448821 Helianthus annuus HOM05D003313 ORTHO05D004217 8.1e-28 129.4 75 80.0
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 8.1e-28 129.4 124 51.6
SHI06540 Sapria himalayana HOM05D003313 ORTHO05D004217 6.8e-27 126.3 78 76.9
arahy.Tifrunner.gnm1.ann1.ZR84UM Arachis hypogaea HOM05D003313 ORTHO05D012270 2.1e-20 104.8 66 81.8
QL09p014688 Quercus lobata HOM05D000257 ORTHO05D009129 7.1e-16 89.7 86 54.7
SHI06533 Sapria himalayana HOM05D003313 ORTHO05D004217 1.2e-15 89.0 58 74.1
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 1.4e-11 75.5 44 81.8
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 2.4e-11 74.7 63 65.1
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 4.0e-11 73.9 41 87.8
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 3.8e-09 67.4 35 91.4
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 4.9e-09 67.0 35 91.4
Psat5g204560 Pisum sativum HOM05D000518 ORTHO05D000737 1.1e-08 65.9 34 91.2
VMungo0720G1425 Vigna mungo HOM05D003313 ORTHO05D004217 1.9e-08 65.1 37 86.5
SMO334G0084 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 3.0e-06 57.8 96 38.5


User provided reference genes

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