Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8371 Trifolium pratense HOM05D003313 ORTHO05D004217 0.0e+00 1597.8 860 100.0
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 0.0e+00 1422.1 843 91.2
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 0.0e+00 1414.1 846 91.1
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 0.0e+00 1357.8 850 87.1
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 0.0e+00 1332.4 851 85.5
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 0.0e+00 1317.4 856 85.4
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 0.0e+00 1300.4 855 84.1
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 0.0e+00 1294.3 847 85.1
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 0.0e+00 1288.1 812 86.3
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 0.0e+00 1285.8 812 86.0
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 0.0e+00 1261.5 734 90.5
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 0.0e+00 1246.1 841 82.2
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 0.0e+00 1208.7 797 80.6
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 0.0e+00 1206.8 747 84.5
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 0.0e+00 1202.2 750 84.9
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 0.0e+00 1197.2 749 85.0
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 0.0e+00 1197.2 750 84.7
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 0.0e+00 1193.3 806 78.7
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 0.0e+00 1189.1 854 76.3
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 0.0e+00 1187.9 813 78.0
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 0.0e+00 1187.6 813 78.0
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 0.0e+00 1187.6 813 79.2
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 0.0e+00 1186.8 813 78.0
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 0.0e+00 1186.8 792 81.4
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 0.0e+00 1185.6 825 76.1
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 0.0e+00 1185.2 813 77.9
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 0.0e+00 1185.2 787 81.2
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 0.0e+00 1184.5 797 80.1
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 0.0e+00 1183.7 813 77.6
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 0.0e+00 1181.4 846 77.5
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 0.0e+00 1180.6 829 77.9
CiPaw.01G000400 Carya illinoinensis HOM05D003313 ORTHO05D004217 0.0e+00 1173.7 842 77.0
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 0.0e+00 1172.1 845 77.0
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 0.0e+00 1169.1 861 75.4
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 0.0e+00 1168.7 844 76.8
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 0.0e+00 1167.5 847 75.7
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 0.0e+00 1165.2 749 82.4
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 0.0e+00 1163.7 736 83.2
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 0.0e+00 1163.3 752 82.0
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 0.0e+00 1162.9 728 83.9
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 0.0e+00 1161.7 831 78.7
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 0.0e+00 1161.0 736 82.9
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 0.0e+00 1161.0 736 82.9
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 0.0e+00 1156.7 763 80.7
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 0.0e+00 1155.2 828 75.4
Actinidia17722 Actinidia chinensis HOM05D003313 ORTHO05D004217 0.0e+00 1153.3 745 81.7
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 0.0e+00 1149.8 853 74.0
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 0.0e+00 1148.7 854 73.1
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 0.0e+00 1147.9 784 79.0
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 0.0e+00 1146.7 751 81.2
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 0.0e+00 1146.7 751 81.2
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 0.0e+00 1145.6 751 80.4
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 0.0e+00 1141.3 845 73.1
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 0.0e+00 1140.9 739 80.9
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 0.0e+00 1140.6 743 81.4
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 0.0e+00 1138.3 721 82.8
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 0.0e+00 1137.5 753 80.5
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 0.0e+00 1137.5 793 77.2
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 0.0e+00 1137.5 747 81.0
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 0.0e+00 1137.5 748 80.6
vmacro01644 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 0.0e+00 1135.6 844 75.4
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 0.0e+00 1132.1 815 76.9
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 0.0e+00 1128.2 917 68.8
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 0.0e+00 1128.2 714 81.4
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 0.0e+00 1127.1 750 80.9
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 0.0e+00 1127.1 750 80.9
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 0.0e+00 1126.7 833 76.0
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 0.0e+00 1125.5 750 80.7
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 0.0e+00 1125.5 750 80.7
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 0.0e+00 1123.6 728 80.6
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 0.0e+00 1122.1 754 79.4
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 0.0e+00 1122.1 754 79.4
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 0.0e+00 1121.3 750 79.5
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 0.0e+00 1119.8 858 73.1
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 0.0e+00 1118.2 832 73.1
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 0.0e+00 1117.1 832 73.1
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 0.0e+00 1116.7 845 72.0
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 0.0e+00 1114.4 755 79.2
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 0.0e+00 1114.4 750 78.8
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 0.0e+00 1112.8 755 79.2
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 0.0e+00 1111.3 729 78.7
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 0.0e+00 1109.7 754 78.4
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 0.0e+00 1109.4 762 77.7
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 0.0e+00 1106.7 749 78.2
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 0.0e+00 1104.7 754 78.0
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 0.0e+00 1100.9 749 78.2
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 0.0e+00 1099.3 756 76.3
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 0.0e+00 1097.8 760 78.0
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 0.0e+00 1092.0 861 71.8
MD10G1148800 Malus domestica HOM05D003313 ORTHO05D004217 0.0e+00 1086.2 805 74.7
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 0.0e+00 1082.0 778 72.6
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 5.9e-312 1073.9 827 70.5
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 6.0e-307 1057.4 727 75.5
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 3.2e-300 1035.0 725 73.9
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.0e-298 1030.0 740 74.6
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 9.6e-297 1023.5 845 68.0
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 5.3e-295 1017.7 743 74.4
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 3.8e-293 1011.5 630 83.0
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 8.4e-293 1010.4 743 72.9
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.7e-291 1005.4 747 71.9
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 2.3e-290 1002.3 744 70.7
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 3.6e-283 978.4 633 80.6
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.0e-282 976.9 735 70.1
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 3.0e-282 975.3 762 70.5
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 5.3e-279 964.5 752 68.5
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 6.5e-277 957.6 736 70.0
COL.COLO4_07112 Corchorus olitorius HOM05D003313 ORTHO05D004217 2.1e-275 952.6 759 70.9
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 1.8e-274 949.5 840 63.8
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 2.4e-271 939.1 817 63.5
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 4.1e-271 938.3 735 67.8
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 2.6e-270 935.6 660 74.1
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 1.3e-269 933.3 580 84.5
Sc10g0006280 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.0e-265 919.5 601 78.7
TWI39G0913 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 1.1e-260 903.7 643 74.7
Haze_14998 Corylus avellana HOM05D003313 ORTHO05D004217 2.4e-255 885.9 644 74.7
Gohir.D08G026400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 1.5e-241 840.1 565 77.3
Gorai.004G022900 Gossypium raimondii HOM05D003313 ORTHO05D004217 1.5e-241 840.1 565 77.3
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 3.1e-239 832.4 518 84.0
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 5.2e-218 761.9 738 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 2.0e-217 760.0 781 56.3
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 5.6e-212 741.9 661 63.8
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 5.2e-210 735.3 800 54.2
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 1.6e-206 723.8 747 55.3
Gohir.A08G016300 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.6e-206 722.2 565 69.4
DCAR_029313 Daucus carota HOM05D003313 ORTHO05D004217 4.3e-180 636.0 429 77.9
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.8e-173 614.0 729 48.3
DCAR_029312 Daucus carota HOM05D003313 ORTHO05D004217 6.9e-170 602.1 408 77.7
DCAR_032260 Daucus carota HOM05D003313 ORTHO05D004217 6.9e-170 602.1 408 77.7
CDE09G0721 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 5.7e-164 582.4 432 71.5
SHI06529 Sapria himalayana HOM05D003313 ORTHO05D004217 1.6e-158 564.3 651 51.6
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 8.9e-117 425.6 256 88.7
Cpa.g.sc17.15 Carica papaya HOM05D003313 ORTHO05D004217 8.0e-110 402.5 341 73.0
Hund25753 Selenicereus undatus HOM05D003313 ORTHO05D004217 4.6e-89 333.6 281 64.1
DCAR_032163 Daucus carota HOM05D003313 ORTHO05D004217 2.4e-82 311.2 243 67.5
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 5.1e-72 276.9 182 86.3
ATR0620G069 Amborella trichopoda HOM05D003313 ORTHO05D004217 4.5e-68 263.8 207 70.5
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.0e-61 240.7 182 76.9
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.0e-61 240.7 182 76.9
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 6.9e-61 240.0 183 76.5
Psat5g204480 Pisum sativum HOM05D000518 ORTHO05D000737 1.9e-50 205.3 139 77.7
ATR0620G130 Amborella trichopoda HOM05D003313 ORTHO05D004217 5.5e-50 203.8 208 56.2
Psat5g199800 Pisum sativum HOM05D003313 ORTHO05D004031 2.1e-49 201.8 131 80.9
Psat5g204560 Pisum sativum HOM05D000518 ORTHO05D000737 3.6e-49 201.1 131 80.2
Cpa.g.sc17.16 Carica papaya HOM05D003313 ORTHO05D004217 6.7e-48 196.8 123 78.9
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.1e-47 196.1 167 65.9
PRCOL_00001888 Prasinoderma coloniale HOM05D003313 ORTHO05D004217 1.4e-42 179.1 672 26.3
CBR_g53818 Chara braunii HOM05D003313 ORTHO05D004217 2.6e-39 168.3 154 57.1
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 3.7e-38 164.5 112 86.6
Cpa.g.sc17.17 Carica papaya HOM05D003313 ORTHO05D004217 8.5e-35 153.3 74 93.2
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 1.8e-32 145.6 167 55.1
CBR_g53812 Chara braunii HOM05D003313 ORTHO05D004217 3.7e-30 137.9 118 55.1
arahy.Tifrunner.gnm1.ann1.UGM12E Arachis hypogaea HOM05D003313 ORTHO05D004217 6.3e-30 137.1 104 77.9
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 1.8e-29 135.6 67 94.0
EL10Ac6g13974 Beta vulgaris HOM05D000877 ORTHO05D012137 1.4e-24 119.4 143 49.0
Psat5g199760 Pisum sativum HOM05D000518 ORTHO05D000737 2.6e-23 115.2 132 53.8
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 5.0e-19 100.9 52 86.5
arahy.Tifrunner.gnm1.ann1.VIS9FS Arachis hypogaea HOM05D003313 ORTHO05D004217 1.5e-18 99.4 108 65.7
Psat5g202120 Pisum sativum HOM05D001594 ORTHO05D002862 1.9e-18 99.0 52 88.5
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 2.5e-18 98.6 52 84.6
GSVIVG01038281001 Vitis vinifera HOM05D003313 ORTHO05D004217 3.6e-17 94.7 72 69.4
Cre12.g535350 Chlamydomonas reinhardtii HOM05D003313 ORTHO05D004217 5.2e-16 90.9 294 29.3
Sed0004563 Sechium edule HOM05D003313 ORTHO05D004217 2.6e-15 88.6 84 56.0
arahy.Tifrunner.gnm1.ann1.W8I5D1 Arachis hypogaea HOM05D003313 ORTHO05D004217 2.4e-13 82.0 52 73.1
FAN19G3111 Fragaria x ananassa HOM05D003313 ORTHO05D015668 3.1e-13 81.6 50 74.0
Lj1A953T45 Lonicera japonica HOM05D003313 ORTHO05D002723 4.1e-13 81.3 49 83.7
Os01g0653350 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 9.1e-13 80.1 53 77.4
Os05g0297001 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 1.2e-12 79.7 57 50.9
arahy.Tifrunner.gnm1.ann1.HX4K8L Arachis hypogaea HOM05D003313 ORTHO05D004217 1.6e-12 79.3 42 85.7
FvH4_1g29860 Fragaria vesca HOM05D003313 ORTHO05D015668 4.5e-12 77.8 54 66.7
ATR0620G024 Amborella trichopoda HOM05D003313 ORTHO05D004217 1.0e-11 76.6 100 52.0
FAN15G1318 Fragaria x ananassa HOM05D003313 ORTHO05D015668 3.8e-11 74.7 65 55.4
FAN21G1344 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.6e-11 73.6 54 63.0
FAN07G0876 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.9e-10 72.4 54 63.0
DCAR_032162 Daucus carota HOM05D003313 ORTHO05D004217 2.5e-10 72.0 92 53.3
vmacro04716 Vaccinium macrocarpon HOM05D001931 ORTHO05D001891 4.2e-10 71.2 41 82.9
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 5.5e-10 70.9 59 62.7
FAN02G4136 Fragaria x ananassa HOM05D003313 ORTHO05D015668 7.2e-10 70.5 54 59.3
FAN05G0528 Fragaria x ananassa HOM05D003313 ORTHO05D015668 8.0e-09 67.0 73 47.9
FAN10G1842 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.4e-08 66.2 54 55.6
FAN15G2142 Fragaria x ananassa HOM05D003313 ORTHO05D015668 1.8e-08 65.9 54 57.4


User provided reference genes

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