Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.9e-238 827.8 431 100.0
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 1.2e-215 753.1 427 90.9
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 1.3e-214 749.6 428 89.3
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.1e-181 640.2 429 78.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.4e-179 632.5 419 77.8
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 3.5e-178 628.6 421 77.0
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 4.5e-178 628.2 419 77.8
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 3.6e-175 618.6 426 76.1
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.4e-155 552.7 420 69.3
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.8e-151 539.3 446 65.2
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.0e-150 537.3 298 89.9
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.7e-146 522.7 418 65.6
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.7e-145 520.0 429 64.1
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 1.1e-142 510.8 431 61.7
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 1.1e-142 510.8 431 61.7
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 8.9e-142 507.7 438 61.4
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 9.2e-139 497.7 426 61.3
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 4.6e-138 495.4 411 63.7
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 2.5e-136 489.6 431 60.6
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.2e-135 487.3 413 62.2
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 2.8e-135 486.1 412 61.7
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 2.8e-135 486.1 411 62.8
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 2.6e-133 479.6 432 58.8
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 3.4e-133 479.2 410 62.2
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.7e-132 476.9 428 58.2
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 2.2e-132 476.5 413 61.7
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.9e-132 475.3 410 60.7
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 4.1e-131 472.2 410 60.5
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.2e-130 470.7 408 60.3
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 1.0e-129 467.6 425 57.2
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 1.8e-126 456.8 419 57.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 4.9e-124 448.7 429 55.9
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 4.2e-123 445.7 420 54.0
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 9.2e-123 444.5 406 56.4
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 9.2e-123 444.5 431 55.5
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.6e-122 443.7 426 55.6
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 2.7e-122 443.0 432 55.8
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 4.6e-122 442.2 410 58.8
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 7.8e-122 441.4 406 56.2
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.3e-121 440.7 409 55.5
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 8.7e-121 438.0 409 55.0
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 3.3e-120 436.0 415 56.9
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 4.3e-120 435.6 409 54.5
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 5.6e-120 435.3 409 54.8
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.6e-119 433.7 406 54.9
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 2.1e-119 433.3 412 54.1
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 2.8e-119 433.0 409 54.0
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 4.8e-119 432.2 427 55.0
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.4e-118 430.6 430 54.7
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 9.0e-118 427.9 409 53.3
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 2.6e-117 426.4 407 54.3
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 7.6e-117 424.9 407 54.1
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 8.4e-116 421.4 430 52.1
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.1e-115 421.0 372 56.7
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 3.2e-115 419.5 409 55.0
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.7e-113 413.7 426 52.6
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 4.3e-112 409.1 421 52.0
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 8.1e-111 404.8 412 52.7
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 8.1e-111 404.8 425 51.5
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 4.0e-110 402.5 435 50.6
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 6.9e-110 401.7 435 50.8
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 6.9e-110 401.7 422 51.7
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.8e-109 398.7 408 51.5
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.7e-108 397.1 432 50.2
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.8e-108 396.0 417 51.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.1e-107 394.4 431 50.1
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 4.2e-107 392.5 420 50.7
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 4.2e-107 392.5 406 51.2
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.1e-106 390.2 348 56.6
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 1.3e-105 387.5 404 50.7
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.8e-105 387.1 409 51.6
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.8e-105 387.1 410 49.8
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.9e-105 386.0 410 50.2
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 1.5e-104 384.0 464 47.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 4.8e-103 379.0 370 53.8
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 4.8e-103 379.0 404 50.2
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 9.0e-102 374.8 420 49.3
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 1.3e-100 370.9 363 52.1
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.9e-99 367.1 324 59.9
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.1e-94 351.3 420 48.1
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 1.1e-94 351.3 401 48.1
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.4e-94 350.9 332 61.4
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 6.9e-94 348.6 432 47.5
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 3.9e-89 332.8 383 48.8
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 8.7e-89 331.6 410 45.6
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 2.2e-87 327.0 414 44.7
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 2.2e-87 327.0 420 44.3
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 5.0e-84 315.8 312 58.7
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.4e-81 307.8 337 53.4
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 1.1e-80 304.7 419 43.0
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.4e-78 297.0 285 57.9
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.6e-74 283.1 368 45.1
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 2.5e-67 260.4 370 36.5
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 3.9e-65 253.1 383 38.9
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.7e-63 247.7 243 54.3
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.2e-63 247.3 389 35.5
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 1.1e-62 245.0 355 40.0
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.7e-60 237.7 204 56.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 6.1e-58 229.2 431 33.9
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 2.3e-49 200.7 198 46.5
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.0e-41 175.3 208 49.0
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 3.2e-30 137.1 198 39.4
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.2e-24 118.6 80 63.8
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.0e-20 104.0 108 47.2
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 9.5e-19 99.0 200 32.0
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.8e-18 97.4 64 56.2
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.2e-16 92.0 64 56.2
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.6e-16 90.9 56 58.9
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.3e-11 73.9 113 46.9
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 2.6e-08 64.3 174 29.3
Ah.01g017160 Amaranthus hybridus HOM05D001726 ORTHO05D001761 1.4e-06 58.5 163 27.6
MBI15_g33471_MAGBIO Magnolia biondii HOM05D001726 ORTHO05D001761 3.2e-06 57.4 157 29.3
MCO05G687 Micromonas commoda HOM05D001726 ORTHO05D001761 4.2e-06 57.0 184 29.3
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 4.2e-06 57.0 97 40.2
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 5.4e-06 56.6 34 64.7
DCAR_012013 Daucus carota HOM05D001726 ORTHO05D001761 5.4e-06 56.6 154 28.6
RcHm_v2.0_Chr2g0092461 Rosa chinensis HOM05D001726 ORTHO05D001761 5.4e-06 56.6 165 28.5
Zm00001eb061610 Zea mays HOM05D001726 ORTHO05D001761 5.4e-06 56.6 161 28.0
Zm00001eb162120 Zea mays HOM05D001726 ORTHO05D001761 5.4e-06 56.6 162 29.0
CAN.G309.61 Capsicum annuum HOM05D001726 ORTHO05D001761 7.1e-06 56.2 165 29.1
FvH4_1g06720 Fragaria vesca HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
FAN19G1466 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
FAN23G2685 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
FAN26G0969 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
FAN26G3035 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
FAN28G2640 Fragaria x ananassa HOM05D001726 ORTHO05D001761 7.1e-06 56.2 162 28.4
Gohir.A08G244300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 9.3e-06 55.8 165 29.1
Gohir.D08G265200 Gossypium hirsutum HOM05D001726 ORTHO05D001761 9.3e-06 55.8 165 29.1
Gorai.004G283100 Gossypium raimondii HOM05D001726 ORTHO05D001761 9.3e-06 55.8 165 29.1
Os09g0267600 Oryza sativa ssp. japonica HOM05D001726 ORTHO05D001761 9.3e-06 55.8 161 28.0
RcHm_v2.0_Chr7g0204871 Rosa chinensis HOM05D001726 ORTHO05D001761 9.3e-06 55.8 150 26.0
Zm00001eb358220 Zea mays HOM05D001726 ORTHO05D001761 9.3e-06 55.8 161 28.0


User provided reference genes

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