Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 4.5e-151 538.1 285 100.0
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 6.5e-49 198.7 255 51.0
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 1.2e-47 194.5 254 50.4
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 8.7e-46 188.3 222 51.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 8.7e-46 188.3 256 49.2
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 9.7e-45 184.9 259 47.5
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 3.1e-43 179.9 205 55.6
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 9.0e-43 178.3 259 46.7
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 1.2e-42 177.9 215 53.0
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 3.4e-42 176.4 214 51.9
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 1.3e-41 174.5 215 51.2
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 6.5e-41 172.2 255 45.5
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 2.1e-39 167.2 256 44.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 3.6e-39 166.4 252 44.4
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 2.3e-38 163.7 253 43.9
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 8.8e-38 161.8 252 43.7
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.3e-37 159.8 213 47.4
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 7.4e-37 158.7 252 44.0
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 9.7e-37 158.3 256 42.2
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 9.7e-37 158.3 239 43.9
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 1.3e-36 157.9 257 41.2
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 1.3e-36 157.9 235 44.7
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 2.2e-36 157.1 251 41.4
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 2.8e-36 156.8 205 47.3
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.4e-35 154.5 259 41.7
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 4.1e-35 152.9 206 47.6
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 5.3e-35 152.5 254 41.3
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 6.9e-35 152.1 252 41.7
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 9.1e-35 151.8 251 40.6
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 1.2e-34 151.4 250 40.8
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 1.5e-34 151.0 213 43.7
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 2.0e-34 150.6 244 42.2
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 2.0e-34 150.6 252 40.9
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.6e-34 150.2 251 40.2
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 2.6e-34 150.2 263 41.4
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 5.9e-34 149.1 252 40.5
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 5.9e-34 149.1 254 39.4
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 1.0e-33 148.3 251 39.0
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 1.3e-33 147.9 251 40.2
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 1.7e-33 147.5 212 46.2
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 1.7e-33 147.5 212 46.2
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.7e-33 147.5 212 46.2
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 6.5e-33 145.6 208 46.2
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 8.5e-33 145.2 208 46.2
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 8.5e-33 145.2 207 43.5
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.1e-32 144.8 251 39.4
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 1.9e-32 144.1 251 38.2
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 1.9e-32 144.1 255 40.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 2.5e-32 143.7 257 40.9
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 4.2e-32 142.9 212 44.8
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 5.5e-32 142.5 253 42.7
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 9.4e-32 141.7 197 43.7
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 1.6e-31 141.0 199 43.7
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.6e-31 141.0 189 43.4
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 2.7e-31 140.2 206 45.1
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 4.7e-31 139.4 206 44.2
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 7.9e-31 138.7 153 54.9
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 1.0e-30 138.3 209 44.5
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.0e-30 138.3 208 43.3
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 1.4e-30 137.9 210 43.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 1.4e-30 137.9 247 38.5
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 1.4e-30 137.9 201 44.3
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 3.9e-30 136.3 201 43.3
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 6.7e-30 135.6 246 38.2
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 8.8e-30 135.2 206 43.2
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 8.8e-30 135.2 235 40.4
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 8.8e-30 135.2 206 43.7
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 1.1e-29 134.8 239 40.6
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 1.5e-29 134.4 258 38.0
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 3.3e-29 133.3 254 37.4
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 3.3e-29 133.3 242 36.8
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 4.4e-29 132.9 245 40.8
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 4.4e-29 132.9 238 41.2
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 5.7e-29 132.5 270 37.4
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 7.4e-29 132.1 255 34.9
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 9.7e-29 131.7 246 37.0
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.2e-28 130.6 240 41.7
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.8e-27 127.5 252 36.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 7.0e-27 125.6 201 42.3
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.2e-26 124.8 239 39.3
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 7.7e-26 122.1 248 35.1
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 2.2e-25 120.6 243 37.9
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 2.2e-25 120.6 208 40.9
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 2.5e-24 117.1 204 38.2
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 9.4e-24 115.2 139 50.4
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 6.1e-23 112.5 229 38.0
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 1.8e-22 110.9 192 37.0
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 6.7e-22 109.0 107 56.1
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 3.7e-20 103.2 88 60.2
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 7.0e-19 99.0 200 31.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.6e-18 97.1 207 32.9
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.6e-18 97.1 207 32.9
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 4.2e-16 89.7 156 39.1
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.2e-15 88.2 69 68.1
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.1e-15 85.9 201 31.8
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 6.7e-14 82.4 79 57.0
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 8.8e-14 82.0 181 34.3
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 1.2e-13 81.6 191 28.8
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.5e-13 81.3 171 33.9
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.8e-12 76.3 131 38.2
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.2e-10 71.6 75 48.0
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.9e-08 64.3 41 70.7
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 9.4e-08 62.0 67 47.8
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.4e-08 62.0 65 44.6


User provided reference genes

Program Settings