Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8342 Trifolium pratense HOM05D000104 ORTHO05D009920 5.2e-151 537.7 279 100.0
TPR.G39133 Trifolium pratense HOM05D000104 ORTHO05D009920 6.0e-99 364.8 208 90.4
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 2.1e-88 329.7 208 81.2
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 1.4e-87 327.0 208 78.8
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 2.1e-83 313.2 189 83.1
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 5.5e-76 288.5 209 68.4
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 4.1e-71 272.3 187 74.9
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 4.1e-71 272.3 187 74.3
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 5.3e-71 271.9 208 64.9
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.2e-70 270.8 189 73.0
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-69 266.5 189 73.5
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 2.2e-64 250.0 208 61.1
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 6.5e-61 238.4 207 62.8
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 1.1e-52 211.1 203 56.7
MELO3C010518.2 Cucumis melo HOM05D000104 ORTHO05D009920 1.5e-52 210.7 186 54.3
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 1.2e-51 207.6 192 56.2
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 6.1e-51 205.3 186 54.8
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 7.5e-49 198.4 185 54.6
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.1e-47 193.0 185 51.9
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 4.5e-46 189.1 152 63.2
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 7.7e-46 188.3 204 46.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.3e-45 187.6 185 50.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.3e-45 186.8 183 51.9
TWI14G0059 Tripterygium wilfordii HOM05D000447 ORTHO05D000315 5.0e-45 185.7 195 49.7
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 8.6e-45 184.9 173 55.5
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 1.9e-44 183.7 182 54.4
Cpa.g.sc101.54 Carica papaya HOM05D000104 ORTHO05D009920 1.8e-42 177.2 182 49.5
Aqoxy5G03976 Aquilegia oxysepala HOM05D000104 ORTHO05D009920 6.8e-42 175.3 185 49.7
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 6.3e-40 168.7 158 55.1
Atru.chr5.193 Acer truncatum HOM05D000104 ORTHO05D009920 1.6e-38 164.1 163 53.4
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 1.6e-38 164.1 192 46.9
FAN03G1668 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.0e-38 163.7 195 46.2
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 2.0e-38 163.7 167 47.3
MD02G1218600 Malus domestica HOM05D000104 ORTHO05D009920 5.0e-37 159.1 158 51.9
ATR1089G041 Amborella trichopoda HOM05D000104 ORTHO05D009920 7.3e-36 155.2 189 43.9
FAN10G1160 Fragaria x ananassa HOM05D000104 ORTHO05D009920 2.8e-35 153.3 197 42.1
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 1.0e-34 151.4 161 47.8
FAN06G4216 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.0e-34 151.4 161 47.8
FAN06G4654 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.0e-34 151.4 161 47.8
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 6.8e-34 148.7 166 48.8
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 1.5e-33 147.5 150 46.0
AT1G02060 Arabidopsis thaliana HOM05D000104 ORTHO05D009920 2.6e-33 146.7 160 48.8
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 4.4e-33 146.0 149 49.7
A04p29080 Brassica napus HOM05D000104 ORTHO05D009920 5.7e-33 145.6 153 49.7
Carub.0001s0018 Capsella rubella HOM05D000104 ORTHO05D009920 9.8e-33 144.8 161 47.8
AL1G10230 Arabidopsis lyrata HOM05D000104 ORTHO05D009920 1.3e-32 144.4 172 45.3
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 1.7e-32 144.1 150 45.3
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 3.7e-32 142.9 154 49.4
CARHR000280 Cardamine hirsuta HOM05D000104 ORTHO05D009920 6.4e-32 142.1 161 47.8
PGSC0003DMG400005248 Solanum tuberosum HOM05D000104 ORTHO05D009920 1.6e-30 137.5 150 43.3
CsaV3_4G027960 Cucumis sativus L. HOM05D000104 ORTHO05D009920 3.5e-30 136.3 186 39.8
BraA04t18379Z Brassica rapa HOM05D000104 ORTHO05D009920 5.9e-30 135.6 153 46.4
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 1.0e-29 134.8 211 40.3
CAN.G388.40 Capsicum annuum HOM05D000104 ORTHO05D009920 2.3e-29 133.7 158 41.8
Sp1g00260 Schrenkiella parvula HOM05D000104 ORTHO05D009920 3.0e-29 133.3 146 49.3
C04p66310 Brassica napus HOM05D000104 ORTHO05D009920 5.0e-29 132.5 141 50.4
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 1.1e-28 131.3 145 44.1
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.9e-28 130.6 149 45.0
Peaxi162Scf00073g00196 Petunia axillaris HOM05D000104 ORTHO05D009920 5.6e-28 129.0 149 40.9
Os02g0121900 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D009920 9.5e-28 128.3 188 39.9
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 4.7e-27 125.9 149 42.3
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 1.8e-26 124.0 161 39.8
HPP92_022001 Vanilla planifolia HOM05D000104 ORTHO05D009920 1.2e-25 121.3 184 39.7
GSVIVG01031674001 Vitis vinifera HOM05D000104 ORTHO05D009920 1.2e-25 121.3 168 42.3
Lj1P971T48 Lonicera japonica HOM05D000104 ORTHO05D009920 2.0e-25 120.6 152 42.1
DCAR_009464 Daucus carota HOM05D000104 ORTHO05D009920 5.8e-25 119.0 117 47.9
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 4.9e-24 115.9 251 37.8
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 3.5e-22 109.8 148 41.9
Zm00001eb230400 Zea mays HOM05D000104 ORTHO05D009920 8.6e-21 105.1 160 36.2
BolC4t28135H Brassica oleracea HOM05D000104 ORTHO05D009920 3.3e-20 103.2 106 51.9
Sabra14G0041200 Salix brachista HOM05D000447 ORTHO05D000315 4.3e-20 102.8 145 40.0
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.6e-20 102.4 149 36.9
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.4e-18 97.8 91 51.6
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 1.4e-18 97.8 164 36.6
Aa31LG1G11380 Aethionema arabicum HOM05D000104 ORTHO05D009920 2.3e-18 97.1 147 40.8
SEGI_00408 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 6.8e-18 95.5 185 30.8
Thhalv10006939m.g Eutrema salsugineum HOM05D000104 ORTHO05D009920 1.5e-17 94.4 156 39.7
BraA03t11298Z Brassica rapa HOM05D006740 ORTHO05D008571 2.5e-12 77.0 214 23.8
A03p20550 Brassica napus HOM05D006740 ORTHO05D008571 5.6e-12 75.9 214 23.4
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 4.7e-11 72.8 184 23.9
MBI14_g24889_MAGBIO Magnolia biondii HOM05D006740 ORTHO05D008571 1.1e-10 71.6 184 24.5
SEGI_40563 Sequoiadendron giganteum HOM05D006740 ORTHO05D009920 2.0e-09 67.4 149 29.5
CSS0044827 Camellia sinensis var. sinensis HOM05D006740 ORTHO05D008571 2.9e-08 63.5 191 24.1
Carub.0004s1913 Capsella rubella HOM05D006740 ORTHO05D008571 8.4e-08 62.0 142 27.5
C03p24150 Brassica napus HOM05D006740 ORTHO05D008571 2.4e-07 60.5 142 26.1
BolC3t14808H Brassica oleracea HOM05D006740 ORTHO05D008571 2.4e-07 60.5 142 26.1
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 3.2e-07 60.1 47 57.4
AL4G33600 Arabidopsis lyrata HOM05D006740 ORTHO05D008571 4.1e-07 59.7 142 27.5
CARHR132360 Cardamine hirsuta HOM05D006740 ORTHO05D008571 7.1e-07 58.9 142 26.1
Thhalv10017966m.g Eutrema salsugineum HOM05D006740 ORTHO05D008571 1.6e-06 57.8 163 23.3
Aa31LG5G22560 Aethionema arabicum HOM05D006740 ORTHO05D008571 2.1e-06 57.4 142 26.1


User provided reference genes

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