Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.4e-28 129.0 71 100.0
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.2e-23 110.5 69 89.9
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.4e-20 101.7 60 93.3
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.6e-16 89.0 63 85.7
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.7e-16 87.4 65 75.4
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.2e-16 87.0 59 84.7
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 8.1e-16 86.7 56 92.9
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.3e-15 85.1 59 81.4
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 4.0e-15 84.3 59 84.7
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 5.2e-15 84.0 67 77.6
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 6.8e-15 83.6 59 83.1
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 6.8e-15 83.6 53 94.3
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 8.9e-15 83.2 59 81.4
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 8.9e-15 83.2 62 82.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 8.9e-15 83.2 59 81.4
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 59 81.4
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 59 78.0
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-14 82.8 59 81.4
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.2e-14 82.8 59 78.0
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 1.5e-14 82.4 59 79.7
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.5e-14 82.4 59 79.7
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.5e-14 82.4 60 81.7
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.0e-14 82.0 60 80.0
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.0e-14 82.0 59 79.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 2.0e-14 82.0 60 80.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.6e-14 81.6 59 79.7
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.6e-14 81.6 59 79.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.6e-14 81.6 59 83.1
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 3.4e-14 81.3 59 78.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.4e-14 81.3 59 83.1
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.4e-14 81.3 59 78.0
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 4.4e-14 80.9 59 81.4
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 4.4e-14 80.9 59 79.7
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.4e-14 80.9 59 78.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 7.5e-14 80.1 57 80.7
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.5e-14 80.1 59 76.3
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 9.9e-14 79.7 59 79.7
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 9.9e-14 79.7 59 78.0
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.9e-14 79.7 60 78.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.3e-13 79.3 59 81.4
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.3e-13 79.3 60 76.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-13 79.3 59 76.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.7e-13 79.0 60 75.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.7e-13 79.0 60 78.3
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.7e-13 79.0 59 78.0
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-13 79.0 59 76.3
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.2e-13 78.6 60 76.7
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.2e-13 78.6 59 78.0
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.2e-13 78.6 60 76.7
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.2e-13 78.6 60 76.7
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.9e-13 78.2 60 75.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.9e-13 78.2 60 75.0
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.9e-13 78.2 59 74.6
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.9e-13 78.2 59 76.3
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.7e-13 77.8 59 78.0
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.7e-13 77.8 67 71.6
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.7e-13 77.8 59 74.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.7e-13 77.8 59 76.3
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 4.9e-13 77.4 59 78.0
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 4.9e-13 77.4 59 76.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 6.4e-13 77.0 59 76.3
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.4e-13 77.0 59 76.3
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.4e-13 77.0 59 78.0
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.4e-13 77.0 62 75.8
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 6.4e-13 77.0 62 75.8
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.4e-13 77.0 59 76.3
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.4e-13 77.0 59 78.0
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 8.3e-13 76.6 59 78.0
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.4e-12 75.9 59 76.3
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.4e-12 75.9 59 76.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.9e-12 75.5 57 75.4
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 5.4e-12 73.9 59 74.6
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 7.1e-12 73.6 57 75.4
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.1e-12 73.6 59 72.9
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 7.1e-12 73.6 59 72.9
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 7.1e-12 73.6 59 74.6
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 7.1e-12 73.6 59 74.6
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.6e-11 72.4 56 75.0
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 6.0e-11 70.5 58 74.1
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 7.8e-11 70.1 57 77.2
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 7.8e-11 70.1 76 61.8
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 3.0e-10 68.2 61 73.8
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.9e-09 65.5 62 71.0
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 4.3e-09 64.3 59 64.4
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.5e-09 63.2 55 61.8
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 9.5e-09 63.2 55 61.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.2e-08 62.8 59 62.7
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.1e-08 62.0 65 61.5
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 4.7e-08 60.8 56 64.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.7e-08 60.8 60 60.0
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 6.2e-08 60.5 59 62.7
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 6.2e-08 60.5 59 62.7
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 6.2e-08 60.5 59 62.7
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 8.1e-08 60.1 56 62.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 8.1e-08 60.1 59 62.7
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 8.1e-08 60.1 56 62.5
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 8.1e-08 60.1 59 62.7
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 8.1e-08 60.1 65 58.5
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.1e-07 59.7 59 59.3
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.1e-07 59.7 65 56.9
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.4e-07 59.3 59 59.3
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.4e-07 59.3 53 69.8
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.4e-07 59.3 55 67.3
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.4e-07 58.5 60 61.7
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.4e-07 58.5 56 62.5
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 3.1e-07 58.2 57 59.6
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.0e-07 57.8 56 62.5
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 4.0e-07 57.8 60 53.3
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 5.2e-07 57.4 56 57.1
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 8.9e-07 56.6 59 57.6
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 8.9e-07 56.6 55 61.8
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.0e-06 55.5 59 57.6
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.6e-06 55.1 56 57.1
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 2.6e-06 55.1 56 62.5
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.6e-06 55.1 60 56.7
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 3.4e-06 54.7 60 58.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 3.4e-06 54.7 60 61.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.4e-06 54.7 65 47.7
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 4.4e-06 54.3 56 58.9
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.4e-06 54.3 55 60.0
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.4e-06 54.3 56 60.7
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.8e-06 53.9 56 58.9
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 5.8e-06 53.9 65 55.4
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 9.9e-06 53.1 65 52.3
SalBow6G2712 Salvia bowleyana HOM05D008947 ORTHO05D010748 9.9e-06 53.1 70 58.6


User provided reference genes

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