Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.9e-83 312.4 148 100.0
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 7.4e-72 273.9 140 93.6
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 1.4e-62 243.0 140 84.3
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 4.1e-62 241.5 140 82.9
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 4.2e-59 231.5 135 84.4
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.8e-57 226.1 141 81.6
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 7.5e-56 220.7 144 73.6
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 9.7e-56 220.3 151 70.9
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.7e-55 219.5 149 72.5
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 2.2e-55 219.2 143 74.1
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 2.2e-55 219.2 143 75.5
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 2.8e-55 218.8 144 74.3
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 4.8e-55 218.0 143 73.4
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 4.8e-55 218.0 145 73.1
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 6.3e-55 217.6 145 73.1
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 6.3e-55 217.6 143 74.1
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.8e-54 216.1 143 72.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.8e-54 216.1 151 72.8
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 5.3e-54 214.5 144 72.9
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 7.0e-54 214.2 145 71.7
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 7.0e-54 214.2 143 72.7
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 7.0e-54 214.2 143 72.0
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 9.1e-54 213.8 143 73.4
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 9.1e-54 213.8 144 73.6
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.6e-53 213.0 142 71.8
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 2.0e-53 212.6 144 72.2
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.0e-53 212.6 144 71.5
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.7e-53 212.2 147 72.1
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 3.5e-53 211.8 143 72.7
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 3.5e-53 211.8 140 75.7
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 4.5e-53 211.5 145 71.0
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 4.5e-53 211.5 143 73.4
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 5.9e-53 211.1 144 70.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.0e-52 210.3 145 71.7
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 1.0e-52 210.3 143 72.0
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 1.3e-52 209.9 143 72.0
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 1.3e-52 209.9 143 72.0
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 2.2e-52 209.1 144 70.1
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 2.2e-52 209.1 150 68.7
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 3.8e-52 208.4 149 70.5
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 3.8e-52 208.4 143 71.3
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 5.0e-52 208.0 147 69.4
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 8.5e-52 207.2 149 69.8
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.5e-51 206.5 143 70.6
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.5e-51 206.5 143 70.6
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.5e-51 206.5 143 70.6
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.5e-51 206.5 144 72.2
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.5e-51 205.7 148 68.9
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 3.2e-51 205.3 144 71.5
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 4.2e-51 204.9 151 63.6
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 7.2e-51 204.1 144 66.7
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 7.2e-51 204.1 145 70.3
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 7.2e-51 204.1 152 65.8
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 7.2e-51 204.1 146 72.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 9.4e-51 203.8 148 65.5
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 9.4e-51 203.8 145 69.0
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 1.2e-50 203.4 139 68.3
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 1.6e-50 203.0 144 70.8
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.6e-50 203.0 143 69.2
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 2.1e-50 202.6 147 68.0
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 2.7e-50 202.2 144 68.1
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.7e-50 202.2 145 68.3
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.7e-50 202.2 145 68.3
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 2.7e-50 202.2 149 68.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 2.7e-50 202.2 150 64.0
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.7e-50 202.2 146 71.9
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 8.0e-50 200.7 143 65.0
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.4e-49 199.9 143 69.2
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 2.3e-49 199.1 150 67.3
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 2.3e-49 199.1 150 68.7
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 8.8e-49 197.2 143 67.1
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 2.0e-48 196.1 143 67.1
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 7.5e-48 194.1 148 65.5
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 1.7e-47 193.0 136 66.2
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.7e-47 193.0 131 73.3
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 1.7e-47 193.0 153 64.7
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 1.7e-47 193.0 147 66.0
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 3.7e-47 191.8 143 66.4
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 1.4e-46 189.9 147 63.3
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 1.4e-46 189.9 150 64.0
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 1.8e-46 189.5 135 69.6
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 4.1e-46 188.3 142 64.1
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 5.9e-45 184.5 133 65.4
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 7.7e-45 184.1 137 66.4
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 1.7e-44 183.0 147 61.2
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 3.8e-44 181.8 139 64.7
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.9e-43 179.5 145 61.4
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.9e-43 179.5 145 61.4
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 1.8e-41 172.9 107 80.4
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 2.6e-40 169.1 144 63.9
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 4.1e-38 161.8 129 59.7
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 7.8e-37 157.5 136 56.6
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 1.7e-36 156.4 104 71.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.7e-36 156.4 158 51.9
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.6e-34 149.8 144 54.2
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 1.0e-33 147.1 133 55.6
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 1.5e-32 143.3 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 2.9e-31 139.0 132 53.0
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 2.7e-29 132.5 95 71.6
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 1.0e-28 130.6 132 51.5
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 1.1e-27 127.1 132 48.5
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 4.3e-27 125.2 105 61.0
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 5.6e-27 124.8 98 64.3
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 7.5e-24 114.4 150 46.7
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 1.3e-23 113.6 146 45.9
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 7.8e-21 104.4 83 66.3
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 1.6e-18 96.7 106 47.2
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.1e-17 92.4 103 50.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 5.2e-17 91.7 142 41.5
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 3.4e-16 89.0 158 36.7
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 2.9e-15 85.9 74 58.1
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.6e-13 80.1 153 35.9
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.4e-08 62.4 102 39.2


User provided reference genes

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