Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.7e-109 399.4 219 100.0
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.3e-60 235.7 213 62.9
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 8.2e-59 231.1 223 63.2
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 5.3e-50 201.8 109 96.3
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.4e-44 181.4 205 55.1
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.4e-42 177.2 207 54.1
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 9.1e-42 174.5 199 55.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.6e-41 172.9 213 52.1
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 8.5e-40 167.9 197 54.8
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 3.9e-37 159.1 196 52.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.0e-36 156.8 217 51.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-35 154.1 196 52.0
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 2.2e-35 153.3 183 53.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.1e-34 151.0 218 48.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 7.2e-31 138.3 203 47.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 3.0e-29 132.9 176 52.8
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 4.0e-29 132.5 213 45.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.0e-28 130.2 197 46.2
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 3.3e-28 129.4 187 48.7
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 5.7e-28 128.6 177 49.7
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 1.7e-27 127.1 204 44.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.7e-27 127.1 211 47.4
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.8e-27 126.3 216 45.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 6.3e-27 125.2 214 43.9
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.2e-27 124.8 204 44.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 1.1e-26 124.4 213 42.7
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.8e-26 123.6 210 42.4
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 2.4e-26 123.2 201 43.8
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 3.1e-26 122.9 215 43.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 5.3e-26 122.1 197 45.7
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.2e-25 120.9 213 44.1
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-25 120.9 202 47.0
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 2.7e-25 119.8 185 46.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.5e-25 119.4 201 43.8
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 5.9e-25 118.6 182 45.6
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 7.7e-25 118.2 199 41.2
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.2e-24 116.7 202 41.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.2e-24 116.7 206 42.7
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 3.8e-24 115.9 182 44.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 3.8e-24 115.9 177 44.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 8.5e-24 114.8 215 43.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 8.5e-24 114.8 182 44.0
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.5e-24 114.8 188 43.6
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 8.5e-24 114.8 176 48.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.1e-23 114.4 219 44.3
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.1e-23 114.4 208 44.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.5e-23 114.0 182 45.6
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.5e-23 113.2 222 41.4
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 7.2e-23 111.7 182 44.0
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 9.4e-23 111.3 199 40.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 8.0e-22 108.2 203 38.9
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.0e-21 107.8 193 42.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.4e-21 107.5 201 39.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.4e-21 107.5 193 42.0
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.8e-21 107.1 200 40.0
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.0e-21 106.3 192 42.7
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 5.2e-21 105.5 186 43.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.8e-21 105.1 203 41.9
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.5e-20 104.0 203 41.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.5e-20 104.0 203 41.9
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.5e-20 104.0 194 38.1
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.0e-20 103.6 203 40.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.0e-20 103.6 191 39.3
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 4.4e-20 102.4 192 40.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 6.3e-19 98.6 169 39.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.4e-18 95.5 205 41.0
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.4e-18 95.5 205 41.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 7.0e-18 95.1 196 40.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.0e-18 95.1 196 38.8
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.2e-17 94.4 198 37.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.7e-17 93.2 206 34.5
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.7e-17 93.2 196 37.8
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 7.7e-17 91.7 192 40.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-16 91.3 204 40.7
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.7e-16 90.5 202 38.1
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.7e-16 90.5 142 49.3
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 5.0e-16 89.0 167 37.7
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 6.5e-16 88.6 166 38.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 8.5e-16 88.2 191 38.2
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.1e-15 87.8 213 36.2
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.5e-15 87.4 185 34.6
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.9e-15 87.0 170 42.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.9e-15 87.0 190 38.4
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 1.9e-15 87.0 188 41.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.9e-15 87.0 185 37.8
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.2e-15 86.3 188 41.0
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 7.2e-15 85.1 195 39.0
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 7.2e-15 85.1 172 39.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 7.2e-15 85.1 167 39.5
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.2e-14 84.3 193 38.9
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.1e-14 83.6 204 34.3
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 6.1e-14 82.0 183 37.2
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 8.0e-14 81.6 193 38.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 1.0e-13 81.3 163 38.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.0e-13 81.3 193 37.3
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.4e-13 80.9 196 35.2
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.8e-13 80.5 169 36.7
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.8e-13 80.5 189 36.0
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.3e-13 80.1 112 50.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 6.8e-13 78.6 172 39.0
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.5e-12 77.4 171 36.3
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.0e-12 77.0 198 34.8
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.6e-12 76.6 187 36.4
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.4e-12 75.9 187 34.8
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.4e-12 75.9 171 35.1
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 9.8e-12 74.7 169 39.1
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 1.3e-11 74.3 66 59.1
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.2e-11 73.6 78 57.7
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.7e-11 72.8 187 35.3
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 8.3e-11 71.6 164 34.8
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-10 70.9 187 35.3
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.4e-10 70.9 187 35.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-10 70.5 186 35.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.8e-10 70.5 176 34.7
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.4e-10 70.1 220 38.2
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.1e-10 69.7 199 30.7
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 4.1e-10 69.3 175 37.7
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 9.2e-10 68.2 202 36.1
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 9.2e-10 68.2 141 37.6
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.2e-09 67.8 189 34.4
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-09 67.8 191 33.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.2e-09 67.8 189 34.4
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.2e-09 67.8 191 33.5
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.6e-09 67.4 174 33.9
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-09 67.4 186 34.9
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.0e-09 67.0 194 32.5
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.7e-09 66.6 189 33.9
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.5e-09 65.9 187 34.2
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 4.5e-09 65.9 187 31.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.0e-08 64.7 184 34.2
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 1.0e-08 64.7 183 34.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.7e-08 63.9 180 35.0
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.7e-08 63.9 182 33.0
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.6e-08 62.0 176 33.5
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 8.6e-08 61.6 38 76.3
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 8.6e-08 61.6 137 37.2
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-07 61.2 163 31.3
Sed0009826 Sechium edule HOM05D004361 ORTHO05D004706 5.6e-07 58.9 196 29.1
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 9.5e-07 58.2 199 32.2
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 9.5e-07 58.2 45 66.7
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.6e-06 57.4 192 30.2
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 1.6e-06 57.4 192 30.2
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-06 57.4 197 29.9
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 1.6e-06 57.4 47 63.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.6e-06 57.4 184 31.5
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.6e-06 56.2 170 34.1
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 6.1e-06 55.5 200 31.5


User provided reference genes

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