Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 4.6e-79 297.7 141 100.0
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 9.3e-64 246.9 141 80.1
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.6e-58 228.8 136 78.7
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.9e-57 224.6 138 75.4
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.7e-55 218.8 135 72.6
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 5.1e-54 214.5 139 66.9
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.5e-53 212.2 165 63.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 3.3e-53 211.8 134 71.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 3.3e-53 211.8 137 70.8
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 4.3e-53 211.5 136 69.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 5.6e-53 211.1 135 71.1
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.3e-52 209.9 123 73.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-52 209.9 137 72.3
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.3e-52 209.9 137 70.1
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.6e-52 209.5 137 71.5
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.1e-52 209.1 137 71.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.1e-52 209.1 136 72.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-52 209.1 138 68.8
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.8e-52 208.8 139 70.5
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 4.8e-52 208.0 140 70.7
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 6.2e-52 207.6 140 70.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 8.1e-52 207.2 140 67.1
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.4e-51 206.5 137 68.6
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.8e-51 206.1 146 66.4
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.8e-51 206.1 135 70.4
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.4e-51 205.7 139 70.5
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 3.1e-51 205.3 134 69.4
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.0e-51 204.9 134 69.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 5.3e-51 204.5 118 78.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 6.9e-51 204.1 135 68.9
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.9e-51 204.1 134 68.7
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 6.9e-51 204.1 137 68.6
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 9.0e-51 203.8 136 66.2
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 9.0e-51 203.8 135 67.4
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 9.0e-51 203.8 135 70.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.0e-50 202.6 134 68.7
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 4.5e-50 201.4 134 69.4
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 5.8e-50 201.1 121 72.7
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 5.8e-50 201.1 135 67.4
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 7.6e-50 200.7 135 68.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 7.6e-50 200.7 136 65.4
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 9.9e-50 200.3 140 70.7
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.3e-49 199.9 117 74.4
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.3e-49 199.9 118 72.9
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.3e-49 199.9 134 67.2
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.9e-49 198.7 136 68.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.9e-49 198.7 137 66.4
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 3.8e-49 198.4 134 67.9
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 4.9e-49 198.0 136 68.4
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 4.9e-49 198.0 135 66.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.9e-49 198.0 135 68.9
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 6.4e-49 197.6 138 65.2
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.4e-49 197.6 137 69.3
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.1e-48 196.8 118 70.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.1e-48 196.8 137 65.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.4e-48 196.4 134 64.2
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.2e-48 195.3 142 63.4
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 4.2e-48 194.9 135 67.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 4.2e-48 194.9 136 66.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 4.2e-48 194.9 136 66.9
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 4.2e-48 194.9 136 66.9
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 5.5e-48 194.5 135 68.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 5.5e-48 194.5 135 68.1
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 5.5e-48 194.5 136 66.2
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 7.1e-48 194.1 135 66.7
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 9.3e-48 193.7 135 67.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.2e-47 193.4 135 67.4
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.2e-47 193.4 138 66.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.1e-47 192.6 140 62.9
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.1e-47 192.6 132 65.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 4.6e-47 191.4 122 70.5
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 6.0e-47 191.0 125 68.0
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.8e-46 189.5 120 67.5
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.3e-46 189.1 116 68.1
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.3e-46 189.1 137 64.2
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 5.1e-46 188.0 146 61.6
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.5e-45 186.4 124 64.5
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.9e-45 186.0 131 64.9
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 4.3e-45 184.9 135 61.5
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 7.4e-45 184.1 120 64.2
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.6e-44 183.0 136 62.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.1e-44 182.6 124 62.9
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.1e-44 182.6 136 59.6
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.1e-44 182.6 136 59.6
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.1e-44 182.6 140 60.7
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.7e-44 181.8 141 61.0
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 4.8e-44 181.4 131 62.6
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.1e-43 180.3 136 61.0
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.4e-43 179.9 125 64.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.4e-43 179.9 125 64.8
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.1e-43 178.7 110 70.0
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 4.0e-43 178.3 132 59.8
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.0e-43 178.3 115 67.8
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.5e-42 176.4 134 59.7
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.6e-42 175.6 127 61.4
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 3.4e-42 175.3 137 62.0
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.0e-41 173.7 134 59.7
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.4e-40 169.9 126 55.6
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 5.5e-40 167.9 121 57.0
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 7.9e-39 164.1 84 84.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.1e-38 161.4 139 60.4
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 6.9e-35 151.0 144 58.3
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.0e-34 149.4 141 57.4
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 4.2e-32 141.7 136 49.3
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.6e-31 139.8 116 53.4
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.0e-30 135.6 83 68.7
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 4.1e-27 125.2 96 55.2
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.9e-26 121.3 74 70.3
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.3e-25 120.2 114 44.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.9e-24 116.3 74 66.2
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 9.4e-24 114.0 92 54.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.6e-23 113.2 119 48.7
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.6e-23 113.2 92 54.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 8.8e-22 107.5 137 45.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.3e-21 105.5 89 50.6
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.2e-20 102.8 93 45.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 2.9e-17 92.4 99 46.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.1e-16 90.5 92 46.7
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.4e-16 90.1 55 70.9
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 3.2e-16 89.0 98 39.8
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 6.7e-14 81.3 57 66.7
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-11 73.6 65 52.3
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.2e-09 66.2 40 70.0
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 5.0e-09 65.1 102 35.3
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.5e-09 64.3 58 53.4
PRCOL_00004218 Prasinoderma coloniale HOM05D002499 ORTHO05D002812 8.5e-09 64.3 84 38.1
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 8.0e-07 57.8 36 66.7
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.0e-06 57.4 88 38.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.8e-06 56.6 38 65.8
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 2.3e-06 56.2 61 36.1
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 4.0e-06 55.5 57 52.6
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 6.7e-06 54.7 61 34.4
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 8.8e-06 54.3 61 34.4


User provided reference genes

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