Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.8e-152 541.2 285 100.0
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 3.5e-134 481.9 285 90.2
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 3.7e-128 461.8 283 87.3
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.1e-123 446.0 284 83.8
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 5.2e-122 441.4 300 79.3
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.2e-120 436.0 284 82.4
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 9.5e-116 420.6 299 76.9
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.3e-112 410.2 299 73.9
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.0e-109 400.6 300 70.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 2.9e-109 399.1 298 71.1
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 8.6e-109 397.5 301 71.4
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.1e-108 397.1 297 71.0
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.9e-108 396.4 298 72.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.5e-108 396.0 300 70.7
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 5.6e-108 394.8 298 72.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.6e-107 393.3 305 70.5
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 6.1e-107 391.3 300 69.7
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 6.1e-107 391.3 299 72.2
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.3e-106 389.4 300 69.7
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 8.9e-106 387.5 302 70.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 1.2e-105 387.1 300 70.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 2.0e-105 386.3 290 71.4
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 3.4e-105 385.6 297 71.4
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.4e-105 385.2 297 70.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 4.4e-105 385.2 300 69.3
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 7.5e-105 384.4 297 70.7
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.2e-104 382.9 292 71.2
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 2.2e-104 382.9 299 70.6
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 2.2e-104 382.9 300 69.7
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 2.9e-104 382.5 300 71.3
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 3.7e-104 382.1 293 72.0
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 4.9e-104 381.7 297 70.4
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 4.9e-104 381.7 297 70.7
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.4e-104 381.3 297 70.0
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.4e-104 381.3 297 70.0
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.4e-103 380.2 297 70.0
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.9e-103 379.8 297 69.7
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.1e-103 378.6 274 74.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 3.0e-101 372.5 296 67.9
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 3.0e-101 372.5 281 71.2
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.9e-100 369.8 298 68.5
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.3e-100 369.0 299 66.6
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 4.3e-100 368.6 297 67.0
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 2.8e-99 365.9 299 65.9
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 4.0e-98 362.1 237 81.9
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.0e-98 362.1 300 66.0
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 2.6e-97 359.4 276 69.6
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 3.4e-97 359.0 299 65.9
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.4e-97 358.6 298 66.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 9.8e-97 357.5 300 64.3
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 1.3e-96 357.1 299 66.2
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.7e-96 356.7 299 67.6
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-96 356.3 299 67.2
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 3.7e-96 355.5 297 65.3
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 8.3e-96 354.4 301 65.4
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 1.1e-95 354.0 301 67.8
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.1e-95 354.0 301 65.1
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-95 354.0 299 66.6
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.9e-95 353.2 298 66.8
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.4e-95 352.8 290 67.9
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 2.4e-95 352.8 292 65.4
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 3.2e-95 352.4 299 65.9
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 3.2e-95 352.4 299 64.5
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 3.2e-95 352.4 290 67.6
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 9.2e-95 350.9 291 67.7
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 9.2e-95 350.9 292 65.1
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.2e-94 350.5 299 65.9
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 2.7e-94 349.4 297 66.0
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.5e-94 349.0 292 64.7
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.0e-93 347.4 291 67.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 2.3e-93 346.3 292 67.5
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.3e-93 346.3 288 67.7
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 5.0e-93 345.1 300 62.7
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 8.6e-93 344.4 301 63.8
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 8.6e-93 344.4 297 63.3
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.1e-92 344.0 293 64.2
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-92 344.0 288 67.4
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.1e-92 344.0 288 67.4
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 1.5e-92 343.6 292 64.7
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 2.5e-92 342.8 298 62.1
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.5e-92 342.8 292 67.1
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.5e-92 342.8 292 67.1
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.5e-92 342.8 299 62.9
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.5e-92 342.8 297 64.0
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 9.5e-92 340.9 285 69.8
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 9.5e-92 340.9 299 62.5
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 2.1e-91 339.7 297 64.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 8.1e-91 337.8 279 68.5
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.8e-90 336.7 292 63.0
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 2.0e-89 333.2 279 67.7
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 4.4e-89 332.0 252 70.2
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 9.9e-89 330.9 300 65.0
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.9e-88 329.3 300 61.0
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 1.1e-87 327.4 253 69.6
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.3e-85 320.5 293 61.1
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 3.3e-84 315.8 250 67.2
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.8e-82 310.1 306 58.2
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 7.6e-81 304.7 304 58.6
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 4.7e-75 285.4 297 55.6
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 2.6e-73 279.6 182 83.0
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 5.4e-71 271.9 296 56.1
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 1.2e-70 270.8 234 65.8
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.7e-69 264.6 191 72.8
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 3.6e-67 259.2 228 64.5
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.0e-65 253.4 232 60.8
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 5.8e-65 251.9 172 76.7
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.1e-63 245.0 297 50.2
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 2.9e-56 223.0 241 47.7
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 3.5e-54 216.1 239 48.5
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 6.0e-54 215.3 160 73.1
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 6.7e-53 211.8 243 47.7
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 1.9e-52 210.3 124 88.7
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.3e-52 209.1 225 50.7
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.5e-49 200.7 235 49.4
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 4.8e-43 179.1 257 42.0
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 2.5e-36 156.8 210 42.9
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 3.3e-36 156.4 125 64.0
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-28 131.3 77 88.3
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.5e-28 131.0 125 60.8
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 5.3e-18 95.9 60 78.3
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.3e-11 74.7 72 55.6
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 2.8e-11 73.6 163 35.0
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 7.0e-10 68.9 88 47.7


User provided reference genes

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