Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.0e-60 236.9 150 100.0
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.9e-47 192.2 141 90.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 5.1e-44 181.4 144 81.2
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.2e-42 174.5 144 81.9
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 6.0e-37 157.9 144 59.7
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-33 146.7 135 66.7
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.1e-33 145.6 138 69.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.1e-33 145.6 138 69.6
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 5.3e-33 144.8 140 57.9
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-32 143.7 138 68.8
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 2.6e-32 142.5 133 57.9
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.4e-32 142.1 141 66.7
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.4e-32 142.1 134 66.4
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.9e-31 139.0 132 64.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.9e-31 138.3 140 65.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.9e-31 138.3 140 65.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 4.9e-31 138.3 114 69.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 6.4e-31 137.9 142 65.5
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 8.4e-31 137.5 139 67.6
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.9e-30 136.3 141 67.4
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.9e-30 136.3 134 54.5
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 4.2e-30 135.2 149 57.7
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.2e-29 133.7 139 64.0
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.2e-29 133.7 141 64.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 2.1e-29 132.9 139 61.9
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.6e-29 131.7 137 62.8
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 6.0e-29 131.3 123 67.5
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 7.9e-29 131.0 84 75.0
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.9e-29 131.0 118 58.5
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.0e-28 130.6 146 51.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.3e-28 130.2 140 59.3
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.3e-28 130.2 137 65.7
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.3e-28 130.2 141 62.4
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.8e-28 129.8 140 66.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.9e-28 128.6 84 72.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.9e-28 128.6 125 67.2
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 5.1e-28 128.3 139 60.4
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 6.7e-28 127.9 127 63.8
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.7e-28 127.9 137 62.8
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 6.7e-28 127.9 82 75.6
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.7e-28 127.5 138 58.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 8.7e-28 127.5 138 60.9
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 1.1e-27 127.1 142 59.9
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-27 127.1 145 61.4
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-27 126.7 83 72.3
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.5e-27 126.7 149 57.0
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.5e-27 126.7 149 56.4
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.5e-27 125.9 136 64.0
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.5e-27 125.9 140 67.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 3.3e-27 125.6 125 65.6
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 5.6e-27 124.8 140 64.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 7.4e-27 124.4 142 61.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.6e-27 124.0 140 50.7
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 9.6e-27 124.0 137 51.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.6e-27 124.0 138 60.1
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.3e-26 123.6 113 57.5
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.6e-26 123.2 83 72.3
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.1e-26 122.9 115 58.3
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.1e-26 122.9 123 59.3
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.8e-26 122.5 131 53.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 4.8e-26 121.7 137 60.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 6.2e-26 121.3 145 46.9
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 6.2e-26 121.3 151 47.7
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 8.2e-26 120.9 138 60.9
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.1e-25 120.6 139 58.3
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.8e-25 119.8 130 63.1
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 5.3e-25 118.2 112 56.2
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 6.9e-25 117.9 125 51.2
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 6.9e-25 117.9 116 52.6
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.5e-24 116.7 114 52.6
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.0e-24 116.3 141 46.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 3.4e-24 115.5 121 66.1
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 4.5e-24 115.2 142 50.7
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 5.8e-24 114.8 126 49.2
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 5.8e-24 114.8 144 46.5
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.6e-24 114.4 117 56.4
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.0e-23 114.0 114 52.6
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.7e-23 113.2 138 47.1
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.2e-23 112.8 127 48.0
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.2e-23 112.8 145 57.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 3.8e-23 112.1 123 48.8
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 4.9e-23 111.7 114 60.5
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 4.9e-23 111.7 114 55.3
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 4.9e-23 111.7 114 61.4
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.9e-23 111.7 142 47.9
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 6.5e-23 111.3 149 47.7
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 1.1e-22 110.5 135 56.3
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.1e-22 110.5 114 62.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.9e-22 109.8 139 46.8
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.2e-22 109.0 139 46.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 4.2e-22 108.6 116 51.7
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.2e-22 108.6 114 69.3
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.5e-22 108.2 135 51.9
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 7.1e-22 107.8 77 66.2
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 9.3e-22 107.5 116 50.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 9.3e-22 107.5 83 65.1
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.2e-21 107.1 116 50.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.6e-21 106.7 115 63.5
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.6e-21 106.7 115 62.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.6e-21 106.7 135 54.8
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.6e-21 106.7 129 51.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.1e-21 106.3 114 64.9
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-21 106.3 153 40.5
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.7e-21 105.9 140 55.0
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 7.9e-21 104.4 115 61.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 7.9e-21 104.4 137 53.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.3e-20 103.6 140 44.3
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 2.3e-20 102.8 83 61.4
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 3.0e-20 102.4 82 62.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 3.0e-20 102.4 139 42.4
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 5.1e-20 101.7 149 51.7
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 5.1e-20 101.7 115 60.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 5.1e-20 101.7 72 70.8
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-19 100.5 139 51.1
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.1e-19 100.5 131 42.0
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 7.4e-19 97.8 147 49.7
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 7.4e-19 97.8 114 57.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 7.4e-19 97.8 82 57.3
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 9.7e-19 97.4 67 70.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 9.7e-19 97.4 83 60.2
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.3e-18 97.1 82 57.3
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 1.3e-18 97.1 140 57.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 2.2e-18 96.3 114 45.6
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.2e-18 96.3 114 45.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 8.2e-18 94.4 81 56.8
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 4.1e-17 92.0 154 40.3
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-16 90.5 82 54.9
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.0e-16 89.7 153 38.6
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 4.5e-16 88.6 81 51.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.1e-14 84.0 139 37.4
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 4.2e-14 82.0 139 41.0
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 4.2e-14 82.0 139 36.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 7.2e-14 81.3 141 44.0
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 7.2e-14 81.3 139 36.7
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 9.3e-14 80.9 139 36.7
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 9.3e-14 80.9 59 67.8
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-13 80.5 122 35.2
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.7e-13 79.3 65 58.5
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.0e-12 75.9 75 46.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 3.9e-12 75.5 59 64.4
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 9.7e-11 70.9 58 60.3
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.7e-10 70.1 133 31.6
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 4.8e-10 68.6 77 46.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 4.8e-10 68.6 145 31.0
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.8e-10 68.6 135 33.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 6.3e-10 68.2 50 66.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.4e-09 67.0 82 43.9
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.1e-09 65.9 81 42.0
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.5e-08 63.5 126 31.0
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.0e-08 63.2 81 42.0
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-08 62.8 122 34.4
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.2e-07 59.7 82 40.2
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.2e-07 59.7 71 43.7
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 5.0e-07 58.5 68 45.6
VMungo1309G0044 Vigna mungo HOM05D014262 ORTHO05D018084 3.2e-06 55.8 64 46.9
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 4.2e-06 55.5 65 43.1


User provided reference genes

Program Settings