Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 5.9e-90 334.3 189 100.0
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 3.0e-65 252.3 197 77.7
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 1.2e-63 246.9 192 77.6
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 1.5e-45 186.8 189 63.5
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.3e-44 183.7 196 64.8
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 3.0e-41 172.6 198 58.6
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 7.3e-40 167.9 198 58.6
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 3.5e-34 149.1 187 56.7
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 9.6e-32 141.0 196 54.1
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 6.2e-31 138.3 209 52.6
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 2.4e-30 136.3 196 54.1
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.0e-25 120.9 117 62.4
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.1e-24 117.5 157 50.3
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.1e-24 117.5 129 60.5
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 4.3e-24 115.5 173 49.7
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 7.4e-24 114.8 152 50.0
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 1.3e-23 114.0 205 45.4
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.6e-23 113.6 180 46.1
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 2.8e-23 112.8 151 53.6
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 3.7e-23 112.5 183 47.0
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 4.8e-23 112.1 172 49.4
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 6.2e-23 111.7 204 47.1
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 8.1e-23 111.3 174 46.6
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.1e-22 110.9 175 45.7
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 1.4e-22 110.5 179 49.7
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 1.4e-22 110.5 132 53.0
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.8e-22 110.2 155 49.7
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 1.8e-22 110.2 121 55.4
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 2.4e-22 109.8 150 49.3
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 2.4e-22 109.8 152 44.1
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 3.1e-22 109.4 130 53.8
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.0e-22 109.0 161 49.7
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 5.3e-22 108.6 157 47.8
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 6.9e-22 108.2 150 48.7
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 6.9e-22 108.2 199 43.2
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 9.0e-22 107.8 165 47.9
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 9.0e-22 107.8 191 42.9
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 1.2e-21 107.5 152 48.7
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.2e-21 107.5 154 51.3
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 1.2e-21 107.5 188 44.1
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 2.0e-21 106.7 160 46.2
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 2.6e-21 106.3 174 45.4
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 3.4e-21 105.9 139 51.1
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 3.4e-21 105.9 193 43.0
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 3.4e-21 105.9 172 48.8
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 4.5e-21 105.5 94 66.0
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 4.5e-21 105.5 116 56.9
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 4.5e-21 105.5 146 50.0
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 5.8e-21 105.1 140 51.4
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 5.8e-21 105.1 194 43.3
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 5.8e-21 105.1 179 46.9
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 9.9e-21 104.4 149 50.3
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.7e-20 103.6 158 47.5
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 2.2e-20 103.2 199 43.7
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.2e-20 103.2 203 40.4
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 2.2e-20 103.2 169 41.4
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 2.2e-20 103.2 182 44.0
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.9e-20 102.8 142 46.5
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 3.8e-20 102.4 166 45.8
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 4.9e-20 102.1 108 57.4
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 6.4e-20 101.7 206 42.2
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 6.4e-20 101.7 173 44.5
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 1.1e-19 100.9 152 47.4
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.1e-19 100.9 190 41.1
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.4e-19 100.5 133 51.1
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.9e-19 100.1 126 52.4
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 1.9e-19 100.1 152 48.0
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 3.2e-19 99.4 190 41.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 4.2e-19 99.0 125 52.0
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 4.2e-19 99.0 194 42.8
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 7.1e-19 98.2 98 59.2
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 7.1e-19 98.2 131 53.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 1.2e-18 97.4 122 51.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.2e-18 97.4 138 45.7
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.6e-18 97.1 105 56.2
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.6e-18 97.1 190 43.2
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 1.6e-18 97.1 191 40.8
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 3.5e-18 95.9 188 42.6
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 3.5e-18 95.9 188 43.1
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 6.0e-18 95.1 185 40.5
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 1.0e-17 94.4 178 41.6
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.0e-17 94.4 127 48.8
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 1.3e-17 94.0 127 48.8
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.3e-17 94.0 150 44.7
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.8e-17 93.6 192 42.2
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 2.3e-17 93.2 127 48.8
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 2.3e-17 93.2 183 42.6
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 3.0e-17 92.8 134 48.5
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 3.9e-17 92.4 134 48.5
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 3.9e-17 92.4 192 39.6
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 6.7e-17 91.7 125 49.6
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 6.7e-17 91.7 190 49.5
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 6.7e-17 91.7 192 41.7
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 8.7e-17 91.3 128 46.9
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 8.7e-17 91.3 183 41.5
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 1.1e-16 90.9 140 43.6
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 2.5e-16 89.7 180 41.1
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.5e-16 89.7 85 60.0
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 3.3e-16 89.4 97 52.6
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 9.6e-16 87.8 173 41.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 2.1e-15 86.7 176 39.2
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 3.7e-15 85.9 127 46.5
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 3.7e-15 85.9 164 40.2
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 8.2e-15 84.7 143 42.7
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.4e-14 84.0 117 47.9
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 1.8e-14 83.6 172 38.4
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 1.8e-14 83.6 130 46.9
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 6.9e-14 81.6 137 46.7
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 9.0e-14 81.3 105 48.6
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 1.2e-13 80.9 120 42.5
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.5e-13 80.5 73 64.4
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 2.0e-13 80.1 69 60.9
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 7.6e-13 78.2 171 41.5
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.8e-12 75.9 77 54.5
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 6.5e-12 75.1 98 52.0
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 8.4e-12 74.7 105 46.7
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 8.4e-12 74.7 109 49.5
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.1e-11 74.3 143 37.1
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 1.9e-11 73.6 154 44.2
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 4.2e-11 72.4 120 43.3
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.2e-10 70.9 115 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 3.0e-09 66.2 52 63.5
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 1.5e-08 63.9 97 45.4
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 1.9e-08 63.5 69 50.7


User provided reference genes

Program Settings