Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 7.7e-36 153.3 78 100.0
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 8.5e-35 149.8 78 96.2
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 8.5e-35 149.8 78 96.2
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 3.2e-34 147.9 78 96.2
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 3.4e-31 137.9 78 88.5
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 3.7e-30 134.4 78 85.9
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 83.3
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 80.8
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.1e-29 131.3 78 82.1
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 4.1e-29 131.0 78 84.6
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 5.4e-29 130.6 78 80.8
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 1.6e-28 129.0 78 82.1
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.6e-28 129.0 78 80.8
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.7e-28 128.3 78 80.8
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 4.5e-28 127.5 79 82.3
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 1.3e-27 125.9 78 79.5
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.3e-27 125.9 78 80.8
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.7e-27 125.6 77 79.2
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 1.7e-27 125.6 78 78.2
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.5e-27 123.6 78 76.9
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 1.1e-26 122.9 80 77.5
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 1.1e-26 122.9 80 77.5
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 1.1e-26 122.9 80 77.5
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 1.1e-26 122.9 82 75.6
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 1.1e-26 122.9 78 75.6
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 1.1e-26 122.9 80 77.5
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 1.9e-26 122.1 80 77.5
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.5e-26 121.7 78 80.8
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 3.2e-26 121.3 80 77.5
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.2e-26 121.3 80 77.5
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 3.2e-26 121.3 80 77.5
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 4.2e-26 120.9 80 76.2
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 4.2e-26 120.9 80 76.2
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 4.2e-26 120.9 80 76.2
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 4.2e-26 120.9 74 79.7
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.2e-25 119.4 80 76.2
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 1.2e-25 119.4 80 76.2
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 2.1e-25 118.6 80 75.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 2.1e-25 118.6 80 75.0
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.1e-25 118.6 78 76.9
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.7e-25 118.2 80 76.2
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 3.6e-25 117.9 78 76.9
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 6.1e-25 117.1 80 76.2
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.0e-24 116.3 78 74.4
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.4e-24 115.9 70 80.0
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 3.0e-24 114.8 78 74.4
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 1.5e-23 112.5 78 73.1
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 1.5e-23 112.5 78 73.1
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 4.4e-23 110.9 78 69.2
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 7.5e-23 110.2 78 67.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 9.8e-23 109.8 77 70.1
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 9.8e-23 109.8 78 70.5
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 9.8e-23 109.8 78 70.5
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 9.8e-23 109.8 78 69.2
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.7e-22 109.0 80 71.2
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.2e-22 108.6 79 69.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 67.9
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 2.8e-22 108.2 80 70.0
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 70.5
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 69.2
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 71.8
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 64.1
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 70.5
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 69.2
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 69.2
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 64.1
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 71.8
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 65.4
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 69.2
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 69.2
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 4.9e-22 107.5 78 66.7
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 69.2
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 67.9
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 8.3e-22 106.7 78 64.1
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 8.3e-22 106.7 78 67.9
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 1.1e-21 106.3 80 67.5
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 67.9
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 1.1e-21 106.3 74 68.9
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 69.2
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 66.7
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 66.7
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 64.1
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.4e-21 105.9 74 70.3
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 67.1
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 70.5
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 67.9
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 67.9
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 64.1
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 3.1e-21 104.8 80 67.5
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 67.9
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 67.9
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 64.1
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 67.9
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 65.4
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 64.1
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 67.9
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 4.1e-21 104.4 78 66.7
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 4.1e-21 104.4 78 67.9
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 5.4e-21 104.0 77 64.9
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.4e-21 104.0 78 67.9
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 66.7
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 7.0e-21 103.6 79 65.8
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 66.7
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 7.0e-21 103.6 78 66.7
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 65.4
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 66.7
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 66.7
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 66.7
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 9.1e-21 103.2 78 66.7
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 66.7
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 1.2e-20 102.8 80 65.0
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 67.9
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 65.4
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 67.9
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.6e-20 102.4 78 65.4
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 1.6e-20 102.4 74 68.9
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 64.1
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 66.7
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 65.4
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 65.4
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 65.4
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.7e-20 101.7 78 65.4
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 2.7e-20 101.7 79 64.6
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 66.7
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 3.5e-20 101.3 79 65.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 66.7
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 65.4
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 3.5e-20 101.3 78 65.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 4.5e-20 100.9 80 65.0
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 4.5e-20 100.9 78 64.1
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 5.9e-20 100.5 78 64.1
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 5.9e-20 100.5 78 65.4
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 7.7e-20 100.1 74 66.2
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 7.7e-20 100.1 78 62.8
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 7.7e-20 100.1 78 64.1
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 7.7e-20 100.1 78 61.5
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 7.7e-20 100.1 78 65.4
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.0e-19 99.8 78 65.4
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.0e-19 99.8 78 65.4
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.0e-19 99.8 78 64.1
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 62.8
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.9e-19 98.2 77 63.6
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 64.1
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 62.8
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 62.8
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 64.1
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 6.6e-19 97.1 77 63.6
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 8.6e-19 96.7 78 59.0
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.1e-18 96.3 74 64.9
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 1.9e-18 95.5 78 60.3
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 2.5e-18 95.1 73 67.1
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 4.2e-18 94.4 78 61.5
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 4.2e-18 94.4 77 62.3
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 4.7e-17 90.9 78 61.5
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 1.4e-16 89.4 62 74.2
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 1.4e-16 89.4 78 60.3
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 4.0e-16 87.8 58 74.1
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 1.2e-15 86.3 78 52.6
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 7.5e-15 83.6 63 68.3
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 1.1e-13 79.7 75 53.3
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.2e-13 78.2 72 58.3
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.6e-12 75.9 78 51.3
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.7e-12 75.1 52 67.3
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 2.7e-12 75.1 52 67.3
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 1.0e-11 73.2 78 51.3
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 1.1e-10 69.7 36 88.9
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 4.3e-10 67.8 51 62.7
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 1.2e-09 66.2 49 57.1
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 4.7e-09 64.3 42 69.0
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 1.0e-08 63.2 69 46.4
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 1.2e-07 59.7 78 46.2
AL1G35910 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 1.5e-07 59.3 44 65.9
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 3.4e-07 58.2 73 49.3
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 4.4e-07 57.8 80 40.0
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 9.8e-07 56.6 41 65.9
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 1.7e-06 55.8 80 42.5
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.9e-06 54.3 39 66.7


User provided reference genes

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