Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.7e-189 664.5 353 100.0
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 5.2e-132 474.9 358 74.3
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 8.4e-130 467.6 346 76.0
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.8e-92 343.6 326 65.6
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.1e-92 342.4 356 59.6
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.0e-87 326.2 356 56.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.3e-85 318.5 365 55.3
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 3.8e-82 309.3 370 53.2
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.1e-80 303.5 359 53.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.6e-78 296.6 358 53.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 3.3e-78 296.2 358 53.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 7.4e-78 295.0 370 53.8
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.8e-71 273.9 361 51.2
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 4.1e-68 262.7 271 58.7
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 3.2e-65 253.1 203 70.9
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.6e-56 224.2 363 47.1
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.3e-53 214.5 390 41.8
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.4e-52 210.3 351 46.7
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 5.4e-52 209.1 369 45.0
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 2.7e-51 206.8 372 42.2
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 3.2e-49 199.9 295 49.8
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.2e-48 198.0 367 40.1
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 3.6e-48 196.4 346 44.2
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 6.8e-47 192.2 367 38.7
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 5.7e-46 189.1 356 40.2
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 7.5e-46 188.7 376 38.3
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.3e-45 188.0 390 38.7
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 1.7e-45 187.6 356 39.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.8e-45 186.8 385 37.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 3.7e-45 186.4 349 43.0
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 4.9e-45 186.0 368 41.0
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.1e-44 184.9 350 41.1
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.8e-44 184.1 386 37.3
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 4.1e-44 183.0 369 37.9
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.2e-44 181.8 308 39.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.2e-44 181.8 349 38.7
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 9.2e-44 181.8 352 40.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.7e-43 180.3 296 44.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.7e-43 180.3 296 44.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.5e-43 179.9 296 44.3
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 3.5e-43 179.9 281 45.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 4.5e-43 179.5 349 40.1
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 5.9e-43 179.1 343 41.7
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.3e-42 177.2 347 39.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-42 177.2 383 38.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 3.8e-42 176.4 351 39.9
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.6e-42 175.3 382 36.6
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 8.6e-42 175.3 383 38.4
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.9e-41 174.1 400 38.5
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-41 172.9 382 36.6
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.5e-41 171.8 349 36.7
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.6e-40 171.0 364 40.1
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.8e-40 170.2 360 40.8
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 2.8e-40 170.2 369 38.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.4e-39 167.9 391 38.9
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.3e-39 167.2 384 37.8
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.8e-39 165.6 378 37.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 4.4e-38 162.9 353 38.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 7.5e-38 162.2 271 44.6
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 7.5e-38 162.2 375 37.1
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 6.4e-37 159.1 375 36.8
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.1e-36 158.3 376 36.2
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-35 154.8 365 35.6
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-35 154.8 382 35.6
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.2e-35 154.8 336 38.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 2.0e-35 154.1 363 36.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.7e-35 153.7 372 35.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 3.5e-35 153.3 372 35.2
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.5e-35 153.3 384 36.5
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.6e-35 152.9 372 35.2
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.6e-35 152.9 350 37.7
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.0e-34 151.8 355 33.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.3e-34 151.4 363 38.3
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 2.3e-34 150.6 263 38.8
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.3e-34 150.6 350 36.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.5e-33 147.9 348 35.9
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.9e-33 147.5 352 35.8
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.5e-33 147.1 279 41.9
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.3e-33 146.7 352 36.9
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 5.6e-33 146.0 345 35.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 7.3e-33 145.6 271 41.3
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.8e-32 143.7 359 36.2
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.7e-32 142.9 370 33.5
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.0e-32 142.1 370 34.3
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.8e-31 141.0 365 36.4
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.8e-31 141.0 211 46.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.8e-31 141.0 362 33.7
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.3e-31 140.6 357 34.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.1e-31 140.2 353 35.4
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 8.9e-31 138.7 292 40.1
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 2.0e-30 137.5 355 36.1
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.3e-29 134.8 371 35.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 4.9e-29 132.9 382 34.6
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 8.3e-29 132.1 281 38.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.3e-29 132.1 335 34.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.2e-28 130.2 346 34.4
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.7e-27 127.1 366 34.7
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.7e-27 127.1 388 36.9
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.6e-27 126.3 356 33.1
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 6.0e-27 125.9 301 37.2
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.3e-26 124.8 303 36.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.5e-25 120.6 345 33.0
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.6e-24 117.9 404 31.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 2.1e-24 117.5 356 32.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.8e-24 117.1 365 32.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-23 115.2 237 40.1
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 1.4e-23 114.8 338 33.4
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.2e-22 111.7 320 35.0
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.4e-22 110.2 177 40.1
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 5.8e-22 109.4 327 33.6
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 9.9e-22 108.6 356 31.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.3e-21 108.2 333 33.9
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.3e-21 108.2 186 37.6
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.7e-21 107.8 351 33.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.2e-21 107.5 373 29.8
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.3e-21 105.5 349 32.4
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.1e-20 105.1 305 35.1
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 5.4e-20 102.8 377 32.1
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.6e-19 101.3 298 32.2
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.6e-19 101.3 327 32.4
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.7e-19 100.5 136 44.9
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.0e-18 98.6 208 37.5
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.3e-18 97.4 295 30.8
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 5.1e-18 96.3 377 32.4
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.1e-17 95.1 280 33.6
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.5e-17 94.7 393 29.8
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 9.5e-17 92.0 294 33.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.2e-16 91.7 326 29.1
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 8.1e-16 89.0 297 30.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.1e-16 89.0 289 31.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-15 88.2 294 32.7
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.8e-15 87.8 263 32.7
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 2.4e-15 87.4 271 35.1
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 5.2e-15 86.3 289 32.5
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 3.4e-14 83.6 123 44.7
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 5.8e-14 82.8 296 30.4
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 3.8e-13 80.1 371 28.0
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.9e-13 79.7 260 33.1
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.9e-13 79.7 137 38.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 8.4e-13 79.0 286 30.1
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 8.4e-13 79.0 303 31.4
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-12 78.6 285 33.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.4e-12 78.2 295 30.5
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.6e-11 74.7 319 31.3
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-11 74.3 252 34.5
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 2.1e-11 74.3 310 30.6
Glyma.U031301 Glycine max HOM05D062889 ORTHO05D004532 2.3e-10 70.9 141 38.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 2.3e-10 70.9 112 42.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.5e-09 68.2 169 36.1
Medtr4g018950 Medicago truncatula HOM05D003987 ORTHO05D004532 4.7e-08 63.2 130 41.5
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.4e-07 60.8 65 55.4
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.6e-06 57.4 237 31.6
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 4.4e-06 56.6 134 33.6


User provided reference genes

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