Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8163 Trifolium pratense HOM05D000071 ORTHO05D019228 4.2e-80 301.6 187 100.0
Glyma.16G188650 Glycine max HOM05D000071 ORTHO05D000029 3.1e-30 136.0 128 72.7
Glyma.16G193532 Glycine max HOM05D000071 ORTHO05D000029 2.9e-28 129.4 128 61.7
Glyma.16G183400 Glycine max HOM05D000071 ORTHO05D000029 8.3e-28 127.9 154 69.5
Medtr7g014430 Medicago truncatula HOM05D000071 ORTHO05D000029 1.0e-25 120.9 202 56.9
Glyma.16G187800 Glycine max HOM05D000071 ORTHO05D000029 4.3e-24 115.5 152 54.6
Medtr7g014970 Medicago truncatula HOM05D019880 ORTHO05D019228 1.4e-22 110.5 201 48.3
Glyma.16G186700 Glycine max HOM05D000071 ORTHO05D000029 3.7e-20 102.4 154 63.0
TPR.G33458 Trifolium pratense HOM05D000071 ORTHO05D000029 5.4e-19 98.6 61 80.3
VMungo0464G1206 Vigna mungo HOM05D000071 ORTHO05D000029 1.2e-18 97.4 62 77.4
Glyma.16G186500 Glycine max HOM05D000071 ORTHO05D000029 2.1e-18 96.7 62 75.8
Glyma.16G188100 Glycine max HOM05D000071 ORTHO05D000029 2.1e-18 96.7 62 75.8
Glyma.U002100 Glycine max HOM05D000071 ORTHO05D000029 2.1e-18 96.7 62 75.8
VMungo0464G0047 Vigna mungo HOM05D000071 ORTHO05D000029 3.5e-18 95.9 62 75.8
Glyma.16G185300 Glycine max HOM05D000071 ORTHO05D000029 7.8e-18 94.7 62 74.2
Phvul.004G115700 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 7.8e-18 94.7 62 74.2
Glyma.16G186900 Glycine max HOM05D000071 ORTHO05D000029 1.3e-17 94.0 154 60.4
Lalb_Chr01g0009361 Lupinus albus HOM05D000071 ORTHO05D000029 1.3e-17 94.0 62 72.6
Glyma.16G184800 Glycine max HOM05D000071 ORTHO05D000029 1.7e-17 93.6 62 74.2
Glyma.16G184266 Glycine max HOM05D000071 ORTHO05D000029 6.6e-17 91.7 59 76.3
Glyma.16G187566 Glycine max HOM05D000071 ORTHO05D000029 8.6e-17 91.3 59 74.6
Glyma.16G185500 Glycine max HOM05D000071 ORTHO05D000029 1.1e-16 90.9 60 73.3
Glyma.16G190800 Glycine max HOM05D000071 ORTHO05D019228 1.1e-16 90.9 62 71.0
Glyma.16G191732 Glycine max HOM05D000071 ORTHO05D000029 1.1e-16 90.9 62 71.0
Gohir.A10G127048 Gossypium hirsutum HOM05D000053 ORTHO05D000035 5.1e-09 65.5 152 30.9
Dinv34740 Davidia involucrata HOM05D000071 ORTHO05D000029 8.6e-09 64.7 162 50.0
QL05p023770 Quercus lobata HOM05D000071 ORTHO05D000029 1.1e-08 64.3 150 34.7
Cfa016335 Carpinus fangiana HOM05D000071 ORTHO05D000029 3.3e-08 62.8 183 45.4
Gorai.011G155400 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.3e-08 62.8 151 29.8
Gohir.A10G127122 Gossypium hirsutum HOM05D000053 ORTHO05D000448 4.3e-08 62.4 151 28.5
Gohir.A10G127159 Gossypium hirsutum HOM05D000053 ORTHO05D000448 4.3e-08 62.4 151 28.5
CANSAT11G2454 Cannabis sativa HOM05D000071 ORTHO05D000029 7.3e-08 61.6 161 48.4
Gohir.D10G139800 Gossypium hirsutum HOM05D000053 ORTHO05D000448 7.3e-08 61.6 151 29.1
Haze_21507 Corylus avellana HOM05D000071 ORTHO05D000029 2.8e-07 59.7 164 48.8
QL03p060568 Quercus lobata HOM05D000071 ORTHO05D000029 2.8e-07 59.7 127 50.4
RcHm_v2.0_Chr2g0155091 Rosa chinensis HOM05D000053 ORTHO05D000035 2.8e-07 59.7 155 25.8
ECA234G2951 Erigeron canadensis HOM05D000053 ORTHO05D000035 1.1e-06 57.8 69 39.1
Solyc12g009510.1 Solanum lycopersicum HOM05D000053 ORTHO05D000035 1.1e-06 57.8 67 38.8
Thecc.07G124400 Theobroma cacao HOM05D000053 ORTHO05D000035 1.1e-06 57.8 188 27.7
RcHm_v2.0_Chr5g0022011 Rosa chinensis HOM05D000071 ORTHO05D000029 1.4e-06 57.4 154 42.2
RcHm_v2.0_Chr5g0020931 Rosa chinensis HOM05D000071 ORTHO05D000029 1.8e-06 57.0 146 42.5
Thecc.07G124600 Theobroma cacao HOM05D000053 ORTHO05D000035 1.8e-06 57.0 169 28.4
Zm00001eb261230 Zea mays HOM05D000071 ORTHO05D000029 1.8e-06 57.0 158 37.3
Gohir.D01G042748 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.4e-06 56.6 79 41.8
Gorai.002G060600 Gossypium raimondii HOM05D000053 ORTHO05D000035 2.4e-06 56.6 79 41.8
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.1e-06 56.2 152 35.5
CAN.G282.34 Capsicum annuum HOM05D000053 ORTHO05D000035 3.1e-06 56.2 71 38.0
arahy.Tifrunner.gnm1.ann1.DZKS62 Arachis hypogaea HOM05D000071 ORTHO05D000029 5.2e-06 55.5 159 45.9
Sopen12g004510 Solanum pennellii HOM05D000053 ORTHO05D000035 6.8e-06 55.1 164 24.4
Thecc.07G004300 Theobroma cacao HOM05D000053 ORTHO05D000035 6.8e-06 55.1 159 27.7
CAN.G575.104 Capsicum annuum HOM05D000033 ORTHO05D007915 8.9e-06 54.7 154 29.2
FAN25G0850 Fragaria x ananassa HOM05D000071 ORTHO05D000029 8.9e-06 54.7 149 41.6
Lalb_Chr02g0158661 Lupinus albus HOM05D000071 ORTHO05D000029 8.9e-06 54.7 140 37.9
QL05p009777 Quercus lobata HOM05D000071 ORTHO05D000029 8.9e-06 54.7 129 49.6


User provided reference genes

Program Settings