Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 3.2e-247 858.2 514 100.0
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.2e-187 659.4 524 80.3
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 4.3e-175 618.6 562 72.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 9.8e-172 607.4 538 68.4
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 9.6e-151 537.7 536 62.3
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.2e-148 530.8 546 62.1
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 5.1e-144 515.4 533 61.2
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 5.6e-143 511.9 584 60.1
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 4.0e-141 505.8 538 63.6
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 4.0e-141 505.8 538 63.6
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.9e-138 496.9 536 67.0
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.4e-138 496.5 550 58.9
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.3e-118 428.7 552 52.9
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.8e-117 427.2 543 54.1
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 4.1e-117 426.0 543 53.6
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 4.1e-117 426.0 543 53.6
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.3e-115 421.0 581 48.2
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.1e-114 417.9 579 47.7
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.9e-113 411.8 538 48.5
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.8e-112 410.6 551 51.7
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.0e-112 409.8 544 48.2
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.9e-112 409.5 545 48.3
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.9e-112 409.5 545 48.3
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.9e-112 409.5 545 48.3
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 6.7e-112 408.7 407 60.7
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 6.7e-112 408.7 588 45.7
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.1e-111 407.9 564 47.9
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.5e-111 406.8 538 48.0
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.7e-111 405.6 541 51.0
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 9.7e-111 404.8 572 47.2
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-110 404.4 542 50.0
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 4.8e-110 402.5 585 49.2
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 4.1e-109 399.4 413 57.9
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 9.1e-109 398.3 579 45.9
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 3.8e-107 392.9 567 46.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 5.0e-107 392.5 560 47.7
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 6.5e-107 392.1 552 48.0
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.2e-106 389.8 586 47.3
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 7.2e-106 388.7 600 46.5
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 7.2e-106 388.7 407 56.3
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.7e-105 386.7 594 45.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.6e-105 386.3 586 47.4
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.7e-105 386.0 594 46.3
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.8e-104 384.0 368 60.3
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.9e-104 382.9 540 48.1
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.9e-104 382.9 589 46.3
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.1e-103 381.3 549 48.3
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.0e-103 380.6 410 56.3
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 2.0e-103 380.6 536 48.7
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.6e-103 380.2 405 56.5
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.3e-103 379.8 412 57.5
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 5.7e-103 379.0 580 47.9
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.7e-102 377.5 548 46.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.8e-102 376.7 581 45.1
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 6.3e-102 375.6 544 47.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.4e-101 373.6 407 56.8
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.1e-101 373.2 584 45.2
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 9.1e-101 371.7 415 53.7
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.5e-100 370.9 529 47.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.5e-100 370.9 403 55.8
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.0e-100 370.5 524 48.7
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.6e-100 370.2 592 44.1
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.5e-100 369.8 584 45.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.7e-99 367.5 566 44.5
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 2.2e-99 367.1 529 47.4
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 2.9e-99 366.7 593 45.7
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.1e-98 364.8 608 43.8
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.2e-98 363.2 410 54.9
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 9.4e-98 361.7 401 54.6
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 9.4e-98 361.7 593 44.5
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.2e-97 361.3 394 54.8
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.6e-97 360.9 395 54.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 1.6e-97 360.9 393 55.0
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 2.7e-97 360.1 573 44.0
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 3.6e-97 359.8 395 54.4
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 3.6e-97 359.8 395 54.4
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 4.7e-97 359.4 533 47.8
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 8.0e-97 358.6 555 45.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 1.0e-96 358.2 414 53.9
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.3e-96 357.1 551 45.2
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 4.0e-96 356.3 429 59.7
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.2e-96 355.9 551 46.1
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.5e-95 354.4 542 50.9
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.5e-95 354.4 414 53.6
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.0e-95 354.0 556 45.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 2.6e-95 353.6 529 51.6
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 3.3e-95 353.2 561 43.0
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 5.7e-95 352.4 418 52.6
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 9.7e-95 351.7 539 49.2
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.2e-94 350.5 477 48.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 8.2e-94 348.6 517 46.4
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.4e-93 347.8 408 54.2
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 2.4e-93 347.1 424 50.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 4.1e-93 346.3 621 44.3
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.0e-91 341.7 544 50.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.0e-91 341.7 566 43.6
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 5.0e-91 339.3 566 45.2
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 3.2e-90 336.7 567 43.0
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 4.7e-89 332.8 549 45.0
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 6.1e-89 332.4 572 44.2
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 4.4e-87 326.2 534 52.2
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 4.8e-86 322.8 486 45.9
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 9.4e-82 308.5 398 48.7
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 5.2e-80 302.8 372 51.3
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 5.7e-79 299.3 359 51.5
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.1e-77 295.0 520 43.8
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.8e-77 294.3 365 50.1
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.0e-75 288.5 377 48.0
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.8e-75 286.6 398 48.2
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 6.1e-73 279.3 475 41.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.0e-67 261.9 545 40.7
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.2e-56 223.0 141 76.6
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.6e-51 206.1 132 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 2.5e-50 204.1 388 39.4
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.4e-48 198.4 344 41.3
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 4.0e-48 196.8 234 46.2
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 6.4e-46 189.5 239 47.7
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 9.2e-45 185.7 407 38.1
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.1e-42 178.7 319 40.4
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 2.1e-41 174.5 196 50.0
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-39 167.9 108 75.9
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.1e-34 152.1 115 67.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 2.1e-33 147.9 331 35.3
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 2.1e-33 147.9 256 42.6
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.2e-30 137.9 197 45.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.2e-30 137.9 197 45.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-30 137.5 103 65.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.9e-30 137.5 103 65.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.0e-27 129.0 356 37.9
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 2.1e-25 121.3 197 41.6
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.6e-17 95.1 116 47.4
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.8e-15 86.7 62 67.7
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 8.4e-14 82.8 172 38.4
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 4.2e-13 80.5 386 28.2
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.0e-11 75.9 195 36.4
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 8.7e-11 72.8 120 40.0
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 2.1e-09 68.2 200 30.0
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 4.8e-09 67.0 205 26.3
Dinv35762 Davidia involucrata HOM05D000142 ORTHO05D001253 4.5e-07 60.5 201 27.9
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 7.6e-07 59.7 208 25.5
Lalb_Chr23g0273421 Lupinus albus HOM05D000142 ORTHO05D001253 1.3e-06 58.9 163 30.1
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 1.7e-06 58.5 223 32.7
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 1.7e-06 58.5 208 26.0
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 1.7e-06 58.5 212 26.9
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.2e-06 58.2 212 25.9
Hma1.2p1_0614F.1_g189420 Hydrangea macrophylla HOM05D000142 ORTHO05D001253 2.2e-06 58.2 204 26.5
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 3.8e-06 57.4 212 25.5
FvH4_7g22430 Fragaria vesca HOM05D000428 ORTHO05D005608 3.8e-06 57.4 222 26.6
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 3.8e-06 57.4 221 26.2
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 3.8e-06 57.4 208 26.0
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 5.0e-06 57.0 216 25.9
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 5.0e-06 57.0 220 29.5
BcaC04g22900 Brassica carinata HOM05D000428 ORTHO05D005608 6.5e-06 56.6 212 26.4
C09p14060 Brassica napus HOM05D000428 ORTHO05D005608 6.5e-06 56.6 212 26.4
BolC9t54303H Brassica oleracea HOM05D000428 ORTHO05D005608 6.5e-06 56.6 212 26.4
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 6.5e-06 56.6 203 27.1
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 6.5e-06 56.6 221 26.2
FAN26G1510 Fragaria x ananassa HOM05D000285 ORTHO05D000241 6.5e-06 56.6 188 25.5
Lalb_Chr03g0043151 Lupinus albus HOM05D000428 ORTHO05D005608 6.5e-06 56.6 208 26.4
Phvul.011G214800 Phaseolus vulgaris HOM05D000428 ORTHO05D005608 6.5e-06 56.6 208 26.4
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 6.5e-06 56.6 216 27.3
VMungo1127G1890 Vigna mungo HOM05D000428 ORTHO05D005608 6.5e-06 56.6 208 26.4
arahy.Tifrunner.gnm1.ann1.IVLA97 Arachis hypogaea HOM05D000428 ORTHO05D005608 8.5e-06 56.2 208 26.9
Glyma.09G001000 Glycine max HOM05D000428 ORTHO05D005608 8.5e-06 56.2 208 26.4
Medtr3g065190 Medicago truncatula HOM05D000428 ORTHO05D005608 8.5e-06 56.2 208 26.4
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 8.5e-06 56.2 220 29.5
Psat5g120280 Pisum sativum HOM05D000428 ORTHO05D005608 8.5e-06 56.2 208 26.4
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 8.5e-06 56.2 221 26.2
TPR.G24896 Trifolium pratense HOM05D000428 ORTHO05D005608 8.5e-06 56.2 208 26.4


User provided reference genes

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