Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.0e-108 396.7 196 100.0
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.8e-89 332.8 196 82.7
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-89 332.4 193 86.0
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 2.3e-89 332.4 196 84.7
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 8.6e-76 287.3 194 75.3
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 1.3e-71 273.5 196 68.9
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 1.3e-71 273.5 196 68.9
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 8.3e-71 270.8 198 70.2
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.0e-70 267.7 198 69.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.0e-68 263.8 199 67.3
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.0e-68 263.8 197 68.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.3e-68 263.5 196 68.9
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.1e-67 260.4 198 68.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.9e-67 259.6 215 64.7
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 2.2e-63 246.1 199 66.3
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 9.2e-62 240.7 199 65.3
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.3e-60 236.9 205 63.4
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.9e-59 233.0 205 63.4
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.1e-57 225.7 201 64.7
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 3.1e-57 225.7 201 64.2
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.2e-57 224.9 208 61.5
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.4e-56 222.2 205 60.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.8e-56 221.5 200 62.5
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 9.9e-56 220.7 214 57.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 62.4
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.9e-55 218.4 201 59.2
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.9e-55 218.4 201 59.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.9e-55 218.4 200 59.0
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.4e-55 218.0 205 61.0
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.1e-54 217.2 201 59.2
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.4e-54 216.1 200 60.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 2.4e-54 216.1 204 58.8
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.2e-54 215.3 201 58.2
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.1e-54 214.5 206 58.3
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.1e-54 214.5 201 58.7
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.1e-54 214.5 201 59.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 7.1e-54 214.5 201 59.7
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.1e-53 213.0 202 58.4
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 6.0e-53 211.5 208 57.2
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.3e-52 209.5 207 60.9
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.9e-52 208.8 205 59.0
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 6.6e-52 208.0 200 56.0
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.5e-51 206.8 202 57.9
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.5e-51 206.1 203 56.7
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.6e-51 204.1 202 56.9
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 9.6e-51 204.1 202 57.4
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 1.2e-50 203.8 200 57.0
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.6e-50 203.4 202 57.4
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.8e-50 202.6 200 56.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.2e-50 201.4 203 54.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 6.2e-50 201.4 200 55.0
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 6.2e-50 201.4 213 54.9
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 8.1e-50 201.1 201 59.2
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-49 200.7 206 57.8
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 1.4e-49 200.3 201 54.7
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-49 200.3 186 58.6
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.8e-49 199.9 202 55.0
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.4e-49 199.5 202 57.9
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 3.1e-49 199.1 201 54.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 3.1e-49 199.1 216 56.0
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.3e-49 198.4 202 54.5
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 6.9e-49 198.0 199 55.8
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 6.9e-49 198.0 199 55.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.2e-48 197.2 202 55.4
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-48 196.8 202 55.0
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.5e-48 196.8 202 55.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-48 196.8 200 57.0
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 2.0e-48 196.4 199 55.8
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.4e-48 195.7 202 55.0
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 4.4e-48 195.3 202 54.0
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.8e-48 194.9 200 57.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.6e-48 194.5 202 53.0
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 9.9e-48 194.1 213 53.1
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.3e-47 193.7 205 53.7
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.2e-47 193.0 205 55.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-47 192.6 201 58.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.9e-47 192.6 201 58.2
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.9e-47 192.6 200 55.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-47 192.6 204 53.9
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.9e-47 191.8 201 53.2
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 8.4e-47 191.0 207 53.6
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 8.4e-47 191.0 204 53.9
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 8.4e-47 191.0 204 53.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.1e-46 190.7 197 57.9
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.4e-46 190.3 195 51.8
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.9e-46 189.9 222 52.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.4e-46 189.5 204 53.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 1.2e-45 187.2 205 52.7
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.7e-45 186.0 206 54.4
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.7e-45 186.0 201 53.2
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.6e-45 185.3 207 53.6
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 6.0e-45 184.9 201 54.7
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 6.0e-45 184.9 202 52.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 6.0e-45 184.9 271 45.0
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.8e-45 184.5 198 56.1
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.3e-44 183.0 207 52.2
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 6.6e-44 181.4 207 52.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 6.6e-44 181.4 205 51.7
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-43 180.6 200 53.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.9e-43 179.9 201 50.7
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.6e-43 178.3 201 49.3
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 7.3e-43 177.9 204 49.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.6e-43 177.6 200 51.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.6e-43 177.6 204 52.0
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 9.6e-43 177.6 206 52.4
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.6e-42 176.8 201 50.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.8e-42 175.3 203 47.8
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.4e-41 173.7 199 50.8
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.8e-41 173.3 200 54.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.8e-41 173.3 221 47.5
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.4e-41 172.9 197 48.2
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 3.1e-41 172.6 199 48.7
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 5.3e-41 171.8 197 48.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 9.0e-41 171.0 202 48.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 9.0e-41 171.0 265 42.6
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.0e-40 169.9 202 49.5
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.0e-40 169.9 202 49.5
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.0e-40 169.9 202 49.5
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.6e-40 167.9 208 50.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 7.6e-40 167.9 206 49.5
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 7.6e-40 167.9 153 64.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 9.9e-40 167.5 210 49.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.2e-39 166.4 202 45.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-38 163.3 201 47.3
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.4e-38 162.9 328 37.2
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 4.2e-38 162.2 195 46.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 7.1e-38 161.4 204 47.5
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 7.1e-38 161.4 204 47.5
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.1e-38 161.4 118 72.9
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.1e-37 159.8 204 48.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.6e-37 158.7 180 49.4
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 3.0e-36 156.0 195 45.6
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.6e-35 151.8 202 45.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-34 150.2 152 58.6
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.8e-34 149.4 201 43.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 6.2e-34 148.3 95 76.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 1.8e-33 146.7 198 45.5
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 3.1e-33 146.0 201 44.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 9.0e-33 144.4 95 73.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.4e-32 142.5 201 46.3
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 3.8e-31 139.0 89 70.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.8e-31 139.0 195 47.2
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.5e-30 136.3 121 56.2
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.7e-29 132.9 105 61.9
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.1e-27 127.5 139 51.8
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 5.6e-27 125.2 93 60.2
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-26 124.0 154 51.3
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.6e-26 123.6 170 43.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.6e-26 123.6 103 57.3
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 4.8e-26 122.1 164 45.7
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 8.2e-26 121.3 156 48.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.5e-24 117.1 153 48.4
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 7.6e-24 114.8 200 38.5
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 2.7e-21 106.3 167 40.7
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 6.7e-20 101.7 163 44.8
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.9e-19 100.1 155 40.6
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 6.3e-18 95.1 131 45.8
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 2.4e-17 93.2 103 51.5
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.7e-16 88.2 124 47.6
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.5e-14 83.2 73 57.5
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.7e-13 79.7 54 74.1
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 6.1e-13 78.6 44 84.1
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.0e-12 77.8 96 46.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.9e-12 75.9 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.9e-12 75.9 44 79.5
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.9e-12 75.9 199 34.2
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 5.1e-12 75.5 52 63.5
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.5e-08 63.9 121 38.0
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.5e-07 58.5 84 36.9


User provided reference genes

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