Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 8.1e-159 565.1 277 100.0
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 6.1e-122 442.6 277 79.1
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 1.2e-114 418.3 283 74.9
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 7.0e-110 402.5 244 78.3
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 2.4e-94 350.9 242 74.4
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 4.1e-86 323.6 282 61.0
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 5.6e-83 313.2 288 58.7
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 7.3e-83 312.8 277 59.9
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.6e-82 311.6 233 67.0
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 8.9e-81 305.8 252 60.7
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 7.5e-80 302.8 285 59.3
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 7.5e-80 302.8 275 57.8
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 4.0e-73 280.4 285 55.1
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 6.8e-73 279.6 281 55.5
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 2.9e-71 274.2 290 52.4
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.7e-66 256.9 221 57.9
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.1e-65 255.8 292 52.7
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 2.3e-65 254.6 289 50.5
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 6.8e-65 253.1 270 51.9
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 8.9e-65 252.7 288 49.7
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 1.4e-62 245.4 227 56.8
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 4.1e-62 243.8 274 50.0
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 2.7e-61 241.1 243 52.3
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 1.1e-59 235.7 224 51.8
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 7.3e-59 233.0 227 52.9
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 1.2e-58 232.3 214 55.6
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 2.8e-58 231.1 287 45.6
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 1.4e-57 228.8 235 51.5
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 1.2e-56 225.7 217 53.5
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 3.4e-56 224.2 227 50.7
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 9.3e-54 216.1 246 47.2
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.1e-53 214.9 227 48.5
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 6.0e-53 213.4 189 57.1
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 8.7e-52 209.5 228 44.7
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 9.6e-51 206.1 282 43.3
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 1.8e-49 201.8 230 49.6
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 3.1e-49 201.1 221 45.7
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 3.1e-49 201.1 221 45.7
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 9.0e-49 199.5 273 43.2
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 1.5e-48 198.7 214 46.7
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 5.8e-48 196.8 198 51.5
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 2.1e-45 188.3 225 45.8
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 3.5e-45 187.6 299 40.8
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 3.5e-45 187.6 299 40.8
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 6.0e-45 186.8 227 43.6
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 6.0e-45 186.8 227 43.2
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 3.9e-44 184.1 260 38.5
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 3.9e-44 184.1 180 51.7
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 6.7e-44 183.3 168 54.2
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 8.7e-44 183.0 257 40.1
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 2.5e-43 181.4 217 43.8
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.4e-41 174.9 181 47.5
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.4e-41 174.9 181 47.5
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.4e-41 174.9 181 47.5
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-40 172.6 181 47.0
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.2e-40 172.6 181 47.0
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 2.0e-40 171.8 178 49.4
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 5.8e-40 170.2 223 40.8
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 7.6e-40 169.9 269 34.6
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 8.4e-39 166.4 199 44.7
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.4e-38 164.9 287 36.6
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 1.1e-35 156.0 178 44.9
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 1.1e-33 149.4 262 35.5
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.6e-29 134.0 226 37.6
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 4.6e-29 134.0 212 32.5
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 1.3e-28 132.5 181 44.2
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 1.8e-28 132.1 180 40.0
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.8e-28 132.1 234 34.2
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 3.3e-27 127.9 176 37.5
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 4.3e-27 127.5 153 45.1
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 2.1e-21 108.6 193 35.2
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 7.9e-21 106.7 162 32.7
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 4.8e-18 97.4 195 29.7
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 1.3e-15 89.4 111 37.8
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 5.0e-15 87.4 247 27.1
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.1e-13 82.0 177 27.1
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.4e-12 79.3 230 23.9
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.3e-12 78.6 184 28.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 3.0e-12 78.2 219 22.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 3.9e-12 77.8 219 22.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 6.7e-12 77.0 230 23.9
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 8.8e-12 76.6 219 22.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.5e-11 75.9 259 24.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 2.0e-11 75.5 259 24.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 2.0e-11 75.5 259 24.3
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.6e-11 75.1 227 22.0
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.3e-11 74.7 175 28.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 4.4e-11 74.3 211 21.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 9.7e-11 73.2 192 27.1
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-10 72.8 176 26.7
ATR0661G317 Amborella trichopoda HOM05D007545 ORTHO05D009579 2.2e-10 72.0 160 26.9
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 2.2e-10 72.0 187 28.3
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 4.8e-10 70.9 221 22.6
Nn7g37731 Nelumbo nucifera HOM05D030124 ORTHO05D014237 4.8e-10 70.9 122 31.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.8e-10 70.9 162 28.4
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.1e-09 69.7 205 26.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.1e-09 69.7 184 24.5
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.1e-09 69.7 197 26.4
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.1e-09 69.7 193 23.3
A06p08270 Brassica napus HOM05D002890 ORTHO05D009847 1.4e-09 69.3 227 22.0
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 1.8e-09 68.9 201 24.9
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 2.4e-09 68.6 196 22.4
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 3.1e-09 68.2 149 24.2
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 3.1e-09 68.2 171 24.0
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 3.1e-09 68.2 83 38.6
BraA06t24026Z Brassica rapa HOM05D002890 ORTHO05D009847 4.1e-09 67.8 227 21.6
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 4.1e-09 67.8 192 25.0
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 5.3e-09 67.4 207 24.6
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 5.3e-09 67.4 128 28.9
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 5.3e-09 67.4 207 25.1
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.3e-09 67.4 196 27.0
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 6.9e-09 67.0 149 24.2
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 6.9e-09 67.0 141 28.4
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 9.1e-09 66.6 170 27.6
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.1e-09 66.6 224 25.0
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 9.1e-09 66.6 196 22.4
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.2e-08 66.2 189 29.6
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 1.5e-08 65.9 166 28.3
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.5e-08 65.9 173 23.7
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 1.5e-08 65.9 165 28.5
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 2.6e-08 65.1 178 23.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 3.4e-08 64.7 230 25.2
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 4.5e-08 64.3 223 26.0
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 4.5e-08 64.3 143 25.2
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 4.5e-08 64.3 180 28.9
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 5.9e-08 63.9 164 25.0
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 5.9e-08 63.9 182 23.6
Solyc09g082390.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 5.9e-08 63.9 168 26.2
Zm00001eb111970 Zea mays HOM05D017260 ORTHO05D014237 5.9e-08 63.9 111 27.9
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.0e-07 63.2 205 24.4
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.7e-07 62.4 125 30.4
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.7e-07 62.4 125 30.4
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.7e-07 62.4 224 24.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.2e-07 62.0 191 23.0
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 2.2e-07 62.0 162 30.9
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 2.9e-07 61.6 135 29.6
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 2.9e-07 61.6 182 25.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.9e-07 61.6 147 29.9
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 3.8e-07 61.2 165 26.7
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 3.8e-07 61.2 108 32.4
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 3.8e-07 61.2 176 23.3
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 3.8e-07 61.2 147 29.9
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 5.0e-07 60.8 165 27.3
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 5.0e-07 60.8 172 25.6
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 5.0e-07 60.8 147 29.9
Sopen09g031270 Solanum pennellii HOM05D000424 ORTHO05D000355 5.0e-07 60.8 168 25.6
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 6.5e-07 60.5 178 23.6
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 6.5e-07 60.5 128 25.8
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 6.5e-07 60.5 161 27.3
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 6.5e-07 60.5 106 32.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 8.5e-07 60.1 211 26.1
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 1.1e-06 59.7 220 23.6
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 1.1e-06 59.7 182 26.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 1.1e-06 59.7 195 24.6
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 1.1e-06 59.7 134 29.1
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.4e-06 59.3 175 25.7
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.9e-06 58.9 228 23.7
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 1.9e-06 58.9 206 24.8
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 2.5e-06 58.5 239 22.2
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 2.5e-06 58.5 163 25.2
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 2.5e-06 58.5 183 23.5
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 2.5e-06 58.5 225 23.1
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.2e-06 58.2 86 33.7
HanXRQChr13g0420881 Helianthus annuus HOM05D000162 ORTHO05D000090 3.2e-06 58.2 207 28.0
Lsat_1_v5_gn_4_37641 Lactuca sativa HOM05D007639 ORTHO05D009509 3.2e-06 58.2 157 26.1
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 3.2e-06 58.2 157 26.1
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.2e-06 58.2 197 22.8
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 4.2e-06 57.8 220 24.1
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 4.2e-06 57.8 225 21.8
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.2e-06 57.8 173 21.4
RcHm_v2.0_Chr1g0346171 Rosa chinensis HOM05D000104 ORTHO05D009920 4.2e-06 57.8 203 24.1
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 4.2e-06 57.8 132 25.0
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 4.2e-06 57.8 145 29.7
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 5.5e-06 57.4 156 25.6
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 5.5e-06 57.4 204 25.0
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 7.2e-06 57.0 231 25.1
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 7.2e-06 57.0 201 24.9
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 7.2e-06 57.0 197 21.3
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 9.4e-06 56.6 192 23.4
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 9.4e-06 56.6 135 27.4
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 9.4e-06 56.6 137 28.5
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 9.4e-06 56.6 203 24.6
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 9.4e-06 56.6 177 27.1
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 9.4e-06 56.6 197 24.9
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 9.4e-06 56.6 144 29.2
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 9.4e-06 56.6 178 24.7


User provided reference genes

Program Settings