Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 4.1e-56 221.1 107 100.0
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 8.9e-51 203.4 104 90.4
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.7e-39 165.2 96 82.3
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.3e-37 158.3 98 76.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.1e-36 155.6 98 79.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.6e-36 154.8 98 75.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 4.7e-36 154.5 98 75.5
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.2e-36 154.1 98 74.5
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.1e-35 153.3 99 77.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 6.9e-35 150.6 89 76.4
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.0e-35 150.2 93 74.2
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 9.0e-35 150.2 98 76.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 2.6e-34 148.7 89 76.4
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 5.8e-34 147.5 89 78.7
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.7e-33 146.0 89 74.2
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.8e-33 144.8 89 75.3
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.8e-33 144.8 89 75.3
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 3.8e-33 144.8 97 68.0
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 6.4e-33 144.1 89 74.2
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.9e-32 142.5 89 71.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.4e-32 142.1 86 76.7
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.4e-32 142.1 92 71.7
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.2e-32 141.4 89 71.9
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.2e-32 141.4 90 72.2
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.4e-32 141.0 89 73.0
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 5.4e-32 141.0 89 71.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 5.4e-32 141.0 89 71.9
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.4e-32 141.0 86 75.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 7.1e-32 140.6 79 78.5
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 7.1e-32 140.6 89 71.9
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 7.1e-32 140.6 74 85.1
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.3e-32 140.2 89 74.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.6e-31 139.4 90 73.3
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.6e-31 139.4 89 70.8
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.7e-31 138.7 89 67.4
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.7e-31 138.7 89 67.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 3.5e-31 138.3 97 63.9
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.5e-31 138.3 86 75.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 3.5e-31 138.3 74 82.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.6e-31 137.9 89 68.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 6.0e-31 137.5 84 72.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.0e-30 136.7 89 73.0
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.7e-30 136.0 89 73.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-30 136.0 89 70.8
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.3e-30 135.6 84 71.4
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.3e-30 135.6 89 69.7
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.0e-30 135.2 100 62.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.9e-30 134.8 80 72.5
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.6e-30 134.0 97 67.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 8.7e-30 133.7 84 70.2
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.1e-29 133.3 89 71.9
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.9e-29 132.5 89 68.5
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.9e-29 132.5 89 71.9
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 3.3e-29 131.7 84 67.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.3e-29 131.3 89 71.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 5.6e-29 131.0 89 69.7
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.6e-29 130.2 89 70.8
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.3e-28 129.8 86 65.1
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-28 129.8 86 65.1
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.3e-28 129.8 86 65.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.3e-28 129.8 89 67.4
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.6e-28 129.4 89 66.3
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.6e-28 129.4 89 66.3
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.8e-28 128.6 77 77.9
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 2.8e-28 128.6 97 66.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.8e-28 127.9 95 63.2
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.8e-28 127.9 81 69.1
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 6.2e-28 127.5 80 71.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 6.2e-28 127.5 80 73.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.2e-28 127.5 84 70.2
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 8.1e-28 127.1 89 66.3
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-27 126.7 89 67.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.4e-27 126.3 85 71.8
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.4e-27 125.6 91 68.1
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.4e-27 125.6 84 66.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.4e-27 125.6 92 64.1
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.1e-27 125.2 79 70.9
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.3e-27 124.4 91 67.0
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 5.3e-27 124.4 80 67.5
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 5.3e-27 124.4 80 67.5
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.9e-27 124.0 97 59.8
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 9.0e-27 123.6 84 66.7
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.5e-26 122.9 93 64.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 3.4e-26 121.7 84 64.3
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 3.4e-26 121.7 84 64.3
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 7.6e-26 120.6 75 76.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 9.9e-26 120.2 84 66.7
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.8e-25 118.2 91 67.0
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 8.4e-25 117.1 86 66.3
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.4e-24 115.5 68 85.3
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.4e-24 115.5 84 63.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.4e-24 115.5 83 59.0
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.2e-24 115.2 90 66.7
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.2e-24 115.2 90 66.7
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 4.2e-24 114.8 71 70.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 7.1e-24 114.0 82 65.9
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.3e-24 113.6 89 60.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 9.3e-24 113.6 83 56.6
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.6e-23 112.8 85 64.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.7e-23 112.1 88 60.2
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.7e-23 112.1 71 73.2
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.7e-23 112.1 89 58.4
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.0e-22 110.2 74 68.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.0e-22 110.2 76 68.4
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.3e-22 109.8 72 70.8
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 3.9e-22 108.2 87 58.6
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.9e-22 108.2 75 68.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.9e-22 108.2 94 52.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.5e-21 105.5 75 66.7
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.3e-21 105.1 87 55.2
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.7e-20 101.7 80 58.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.8e-20 101.3 62 72.6
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.4e-19 99.0 80 51.2
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.0e-19 98.2 61 78.7
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 5.3e-19 97.8 88 54.5
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 5.3e-19 97.8 83 53.0
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 4.5e-18 94.7 83 51.8
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.8e-18 94.4 114 46.5
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.3e-17 93.2 79 55.7
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.2e-17 92.4 85 49.4
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.9e-17 92.0 78 52.6
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.9e-17 91.3 81 56.8
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.4e-17 90.9 93 50.5
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-16 90.1 57 77.2
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 4.2e-16 88.2 63 69.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.2e-16 88.2 55 72.7
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.2e-15 86.7 60 70.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.1e-15 85.9 59 72.9
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.0e-14 83.6 58 69.0
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.3e-14 83.2 78 51.3
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.8e-14 82.8 73 49.3
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.8e-14 82.8 88 52.3
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 5.1e-14 81.3 83 51.8
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.1e-13 80.1 96 42.7
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.5e-13 79.7 88 47.7
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 4.3e-13 78.2 64 59.4
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 5.6e-13 77.8 48 66.7
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 7.4e-13 77.4 68 55.9
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 9.6e-13 77.0 63 57.1
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 9.6e-13 77.0 73 60.3
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.8e-12 75.5 96 44.8
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.8e-12 75.5 70 54.3
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.1e-11 73.6 66 54.5
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.4e-11 73.2 49 71.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.8e-11 72.8 51 74.5
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.2e-10 70.1 63 58.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.5e-10 69.7 76 47.4
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.5e-10 69.7 65 53.8
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.5e-10 69.7 78 44.9
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 2.0e-10 69.3 48 70.8
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 5.8e-10 67.8 78 47.4
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 7.6e-10 67.4 42 76.2
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.0e-09 67.0 49 57.1
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.7e-09 66.2 82 42.7
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.2e-09 65.9 42 73.8
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.8e-09 65.1 71 42.3
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 6.5e-09 64.3 64 48.4
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.4e-09 63.9 39 76.9
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 8.4e-09 63.9 47 63.8
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 8.4e-09 63.9 50 62.0
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.9e-08 62.8 48 58.3
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 5.5e-08 61.2 37 78.4
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 7.1e-08 60.8 41 65.9
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.2e-07 60.1 38 71.1
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.6e-07 59.7 37 75.7
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.6e-07 58.2 61 47.5
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-07 57.8 37 70.3
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.3e-06 55.8 60 53.3
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 5.1e-06 54.7 71 43.7
Ah.09g229300 Amaranthus hybridus HOM05D003803 ORTHO05D004456 6.7e-06 54.3 62 43.5
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 6.7e-06 54.3 27 88.9
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 6.7e-06 54.3 39 61.5


User provided reference genes

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